Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17310 and ABZR88_RS17315 are separated by 162 nucleotides ABZR88_RS17315 and ABZR88_RS17320 are separated by 3 nucleotides ABZR88_RS17320 and ABZR88_RS17325 overlap by 4 nucleotides
ABZR88_RS17310: ABZR88_RS17310 - methylmalonyl Co-A mutase-associated GTPase MeaB, at 4,236,634 to 4,237,542
_RS17310
ABZR88_RS17315: ABZR88_RS17315 - glycosyltransferase family 2 protein, at 4,237,705 to 4,238,697
_RS17315
ABZR88_RS17320: ABZR88_RS17320 - glycosyl transferase family 90, at 4,238,701 to 4,239,678
_RS17320
ABZR88_RS17325: ABZR88_RS17325 - AAA family ATPase, at 4,239,675 to 4,240,208
_RS17325
Position (kb) 4237
4238
4239 Strain fitness (log2 ratio) -1
0
1 at 4236.717 kb on + strand at 4236.942 kb on - strand, within ABZR88_RS17310 at 4236.976 kb on - strand, within ABZR88_RS17310 at 4237.144 kb on + strand, within ABZR88_RS17310 at 4237.257 kb on + strand, within ABZR88_RS17310 at 4237.543 kb on - strand at 4237.593 kb on - strand at 4237.688 kb on + strand at 4237.771 kb on + strand at 4237.859 kb on + strand, within ABZR88_RS17315 at 4237.952 kb on + strand, within ABZR88_RS17315 at 4238.261 kb on - strand, within ABZR88_RS17315 at 4238.344 kb on - strand, within ABZR88_RS17315 at 4238.541 kb on + strand, within ABZR88_RS17315 at 4238.752 kb on + strand at 4238.752 kb on + strand at 4238.753 kb on - strand at 4238.753 kb on - strand at 4238.798 kb on - strand at 4238.820 kb on - strand, within ABZR88_RS17320 at 4238.872 kb on + strand, within ABZR88_RS17320 at 4238.986 kb on + strand, within ABZR88_RS17320 at 4239.151 kb on - strand, within ABZR88_RS17320 at 4239.328 kb on + strand, within ABZR88_RS17320 at 4239.517 kb on + strand, within ABZR88_RS17320 at 4239.520 kb on + strand, within ABZR88_RS17320 at 4239.527 kb on - strand, within ABZR88_RS17320
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 4,236,717 + +0.4 4,236,942 - ABZR88_RS17310 0.34 -0.8 4,236,976 - ABZR88_RS17310 0.38 -0.7 4,237,144 + ABZR88_RS17310 0.56 +0.0 4,237,257 + ABZR88_RS17310 0.69 +0.1 4,237,543 - -1.7 4,237,593 - -0.4 4,237,688 + -0.0 4,237,771 + +0.4 4,237,859 + ABZR88_RS17315 0.16 +0.3 4,237,952 + ABZR88_RS17315 0.25 -1.7 4,238,261 - ABZR88_RS17315 0.56 -0.3 4,238,344 - ABZR88_RS17315 0.64 -1.2 4,238,541 + ABZR88_RS17315 0.84 +1.3 4,238,752 + +0.2 4,238,752 + +0.3 4,238,753 - -0.6 4,238,753 - +0.1 4,238,798 - +0.7 4,238,820 - ABZR88_RS17320 0.12 -0.4 4,238,872 + ABZR88_RS17320 0.17 -0.5 4,238,986 + ABZR88_RS17320 0.29 +0.1 4,239,151 - ABZR88_RS17320 0.46 -0.6 4,239,328 + ABZR88_RS17320 0.64 +1.5 4,239,517 + ABZR88_RS17320 0.83 +0.4 4,239,520 + ABZR88_RS17320 0.84 +0.2 4,239,527 - ABZR88_RS17320 0.84 +1.3
Or see this region's nucleotide sequence