Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS17185

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS17180 and ABZR88_RS17185 are separated by 30 nucleotidesABZR88_RS17185 and ABZR88_RS17190 are separated by 230 nucleotides ABZR88_RS17180: ABZR88_RS17180 - hypothetical protein, at 4,207,374 to 4,209,074 _RS17180 ABZR88_RS17185: ABZR88_RS17185 - PstS family phosphate ABC transporter substrate-binding protein, at 4,209,105 to 4,210,040 _RS17185 ABZR88_RS17190: ABZR88_RS17190 - energy transducer TonB, at 4,210,271 to 4,211,095 _RS17190 Position (kb) 4209 4210 4211Strain fitness (log2 ratio) -2 -1 0 1at 4208.582 kb on + strand, within ABZR88_RS17180at 4209.130 kb on - strandat 4209.263 kb on - strand, within ABZR88_RS17185at 4209.366 kb on + strand, within ABZR88_RS17185at 4209.432 kb on + strand, within ABZR88_RS17185at 4209.433 kb on - strand, within ABZR88_RS17185at 4209.507 kb on - strand, within ABZR88_RS17185at 4209.716 kb on + strand, within ABZR88_RS17185at 4209.717 kb on - strand, within ABZR88_RS17185at 4209.717 kb on - strand, within ABZR88_RS17185at 4209.762 kb on + strand, within ABZR88_RS17185at 4209.783 kb on - strand, within ABZR88_RS17185at 4210.198 kb on + strandat 4210.199 kb on - strandat 4210.205 kb on - strandat 4210.272 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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4,208,582 + ABZR88_RS17180 0.71 -1.1
4,209,130 - -0.4
4,209,263 - ABZR88_RS17185 0.17 +0.3
4,209,366 + ABZR88_RS17185 0.28 -0.7
4,209,432 + ABZR88_RS17185 0.35 +1.3
4,209,433 - ABZR88_RS17185 0.35 -0.3
4,209,507 - ABZR88_RS17185 0.43 -2.6
4,209,716 + ABZR88_RS17185 0.65 -1.3
4,209,717 - ABZR88_RS17185 0.65 -1.6
4,209,717 - ABZR88_RS17185 0.65 -0.3
4,209,762 + ABZR88_RS17185 0.70 -2.4
4,209,783 - ABZR88_RS17185 0.72 -0.3
4,210,198 + -2.1
4,210,199 - +0.4
4,210,205 - +0.2
4,210,272 + -1.6

Or see this region's nucleotide sequence