Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS16585 and ABZR88_RS16590 are separated by 271 nucleotides ABZR88_RS16590 and ABZR88_RS16595 are separated by 207 nucleotides ABZR88_RS16595 and ABZR88_RS16600 are separated by 65 nucleotides ABZR88_RS16600 and ABZR88_RS16605 are separated by 194 nucleotides
ABZR88_RS16585: ABZR88_RS16585 - hypothetical protein, at 4,066,706 to 4,067,254
_RS16585
ABZR88_RS16590: ABZR88_RS16590 - cytochrome B, at 4,067,526 to 4,067,963
_RS16590
ABZR88_RS16595: ABZR88_RS16595 - anthranilate synthase component I family protein, at 4,068,171 to 4,069,577
_RS16595
ABZR88_RS16600: ABZR88_RS16600 - aminodeoxychorismate/anthranilate synthase component II, at 4,069,643 to 4,070,227
_RS16600
ABZR88_RS16605: ABZR88_RS16605 - indole-3-glycerol phosphate synthase TrpC, at 4,070,422 to 4,071,204
_RS16605
Position (kb)
4068
4069
4070 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4067.186 kb on - strand, within ABZR88_RS16585 at 4067.246 kb on - strand at 4067.270 kb on + strand at 4067.570 kb on - strand, within ABZR88_RS16590 at 4067.635 kb on - strand, within ABZR88_RS16590 at 4067.732 kb on - strand, within ABZR88_RS16590 at 4067.821 kb on + strand, within ABZR88_RS16590 at 4067.868 kb on - strand, within ABZR88_RS16590 at 4067.914 kb on + strand, within ABZR88_RS16590 at 4068.114 kb on + strand at 4068.416 kb on + strand, within ABZR88_RS16595 at 4068.481 kb on + strand, within ABZR88_RS16595 at 4068.617 kb on + strand, within ABZR88_RS16595 at 4068.823 kb on - strand, within ABZR88_RS16595 at 4069.041 kb on - strand, within ABZR88_RS16595 at 4069.178 kb on + strand, within ABZR88_RS16595 at 4069.258 kb on + strand, within ABZR88_RS16595 at 4069.689 kb on - strand at 4070.133 kb on - strand, within ABZR88_RS16600 at 4070.338 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 4,067,186 - ABZR88_RS16585 0.87 -0.0 4,067,246 - +0.1 4,067,270 + +0.7 4,067,570 - ABZR88_RS16590 0.10 -1.9 4,067,635 - ABZR88_RS16590 0.25 +2.3 4,067,732 - ABZR88_RS16590 0.47 +1.3 4,067,821 + ABZR88_RS16590 0.67 -1.3 4,067,868 - ABZR88_RS16590 0.78 -0.5 4,067,914 + ABZR88_RS16590 0.89 -1.5 4,068,114 + -2.8 4,068,416 + ABZR88_RS16595 0.17 -1.3 4,068,481 + ABZR88_RS16595 0.22 -0.7 4,068,617 + ABZR88_RS16595 0.32 +1.3 4,068,823 - ABZR88_RS16595 0.46 +0.5 4,069,041 - ABZR88_RS16595 0.62 -1.0 4,069,178 + ABZR88_RS16595 0.72 +0.3 4,069,258 + ABZR88_RS16595 0.77 -0.3 4,069,689 - -2.4 4,070,133 - ABZR88_RS16600 0.84 -1.5 4,070,338 - -0.1
Or see this region's nucleotide sequence