Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS16595

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS16585 and ABZR88_RS16590 are separated by 271 nucleotidesABZR88_RS16590 and ABZR88_RS16595 are separated by 207 nucleotidesABZR88_RS16595 and ABZR88_RS16600 are separated by 65 nucleotidesABZR88_RS16600 and ABZR88_RS16605 are separated by 194 nucleotides ABZR88_RS16585: ABZR88_RS16585 - hypothetical protein, at 4,066,706 to 4,067,254 _RS16585 ABZR88_RS16590: ABZR88_RS16590 - cytochrome B, at 4,067,526 to 4,067,963 _RS16590 ABZR88_RS16595: ABZR88_RS16595 - anthranilate synthase component I family protein, at 4,068,171 to 4,069,577 _RS16595 ABZR88_RS16600: ABZR88_RS16600 - aminodeoxychorismate/anthranilate synthase component II, at 4,069,643 to 4,070,227 _RS16600 ABZR88_RS16605: ABZR88_RS16605 - indole-3-glycerol phosphate synthase TrpC, at 4,070,422 to 4,071,204 _RS16605 Position (kb) 4068 4069 4070Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4067.186 kb on - strand, within ABZR88_RS16585at 4067.246 kb on - strandat 4067.270 kb on + strandat 4067.570 kb on - strand, within ABZR88_RS16590at 4067.635 kb on - strand, within ABZR88_RS16590at 4067.732 kb on - strand, within ABZR88_RS16590at 4067.821 kb on + strand, within ABZR88_RS16590at 4067.868 kb on - strand, within ABZR88_RS16590at 4067.914 kb on + strand, within ABZR88_RS16590at 4068.114 kb on + strandat 4068.416 kb on + strand, within ABZR88_RS16595at 4068.481 kb on + strand, within ABZR88_RS16595at 4068.617 kb on + strand, within ABZR88_RS16595at 4068.823 kb on - strand, within ABZR88_RS16595at 4069.041 kb on - strand, within ABZR88_RS16595at 4069.178 kb on + strand, within ABZR88_RS16595at 4069.258 kb on + strand, within ABZR88_RS16595at 4069.689 kb on - strandat 4070.133 kb on - strand, within ABZR88_RS16600at 4070.338 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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4,067,186 - ABZR88_RS16585 0.87 -0.0
4,067,246 - +0.1
4,067,270 + +0.7
4,067,570 - ABZR88_RS16590 0.10 -1.9
4,067,635 - ABZR88_RS16590 0.25 +2.3
4,067,732 - ABZR88_RS16590 0.47 +1.3
4,067,821 + ABZR88_RS16590 0.67 -1.3
4,067,868 - ABZR88_RS16590 0.78 -0.5
4,067,914 + ABZR88_RS16590 0.89 -1.5
4,068,114 + -2.8
4,068,416 + ABZR88_RS16595 0.17 -1.3
4,068,481 + ABZR88_RS16595 0.22 -0.7
4,068,617 + ABZR88_RS16595 0.32 +1.3
4,068,823 - ABZR88_RS16595 0.46 +0.5
4,069,041 - ABZR88_RS16595 0.62 -1.0
4,069,178 + ABZR88_RS16595 0.72 +0.3
4,069,258 + ABZR88_RS16595 0.77 -0.3
4,069,689 - -2.4
4,070,133 - ABZR88_RS16600 0.84 -1.5
4,070,338 - -0.1

Or see this region's nucleotide sequence