Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS16230 and ABZR88_RS16235 are separated by 34 nucleotides ABZR88_RS16235 and ABZR88_RS16240 are separated by 227 nucleotides ABZR88_RS16240 and ABZR88_RS16245 are separated by 13 nucleotides
ABZR88_RS16230: ABZR88_RS16230 - DNA polymerase III subunit beta, at 3,992,532 to 3,993,659
_RS16230
ABZR88_RS16235: ABZR88_RS16235 - gliding motility-associated ABC transporter substrate-binding protein GldG, at 3,993,694 to 3,996,093
_RS16235
ABZR88_RS16240: ABZR88_RS16240 - hypothetical protein, at 3,996,321 to 3,996,860
_RS16240
ABZR88_RS16245: ABZR88_RS16245 - ATP-binding cassette domain-containing protein, at 3,996,874 to 3,997,581
_RS16245
Position (kb)
3993
3994
3995
3996
3997 Strain fitness (log2 ratio)
-2
-1
0
1 at 3993.719 kb on - strand at 3993.751 kb on + strand at 3993.751 kb on + strand at 3993.752 kb on - strand at 3993.766 kb on + strand at 3993.836 kb on - strand at 3993.931 kb on - strand at 3994.188 kb on + strand, within ABZR88_RS16235 at 3994.214 kb on + strand, within ABZR88_RS16235 at 3994.315 kb on + strand, within ABZR88_RS16235 at 3994.343 kb on - strand, within ABZR88_RS16235 at 3994.553 kb on - strand, within ABZR88_RS16235 at 3994.824 kb on + strand, within ABZR88_RS16235 at 3995.118 kb on - strand, within ABZR88_RS16235 at 3995.412 kb on + strand, within ABZR88_RS16235 at 3995.494 kb on - strand, within ABZR88_RS16235 at 3995.678 kb on + strand, within ABZR88_RS16235 at 3995.739 kb on + strand, within ABZR88_RS16235 at 3995.742 kb on - strand, within ABZR88_RS16235 at 3995.748 kb on - strand, within ABZR88_RS16235 at 3995.922 kb on - strand at 3996.034 kb on - strand at 3996.090 kb on - strand at 3996.281 kb on + strand at 3996.406 kb on - strand, within ABZR88_RS16240 at 3996.563 kb on - strand, within ABZR88_RS16240 at 3996.568 kb on - strand, within ABZR88_RS16240 at 3996.949 kb on - strand, within ABZR88_RS16245 at 3996.949 kb on - strand, within ABZR88_RS16245 at 3997.021 kb on - strand, within ABZR88_RS16245
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 3,993,719 - -0.3 3,993,751 + -0.3 3,993,751 + -2.4 3,993,752 - -0.7 3,993,766 + -0.5 3,993,836 - -1.1 3,993,931 - -1.6 3,994,188 + ABZR88_RS16235 0.21 -0.9 3,994,214 + ABZR88_RS16235 0.22 -1.5 3,994,315 + ABZR88_RS16235 0.26 -0.6 3,994,343 - ABZR88_RS16235 0.27 -1.2 3,994,553 - ABZR88_RS16235 0.36 -0.7 3,994,824 + ABZR88_RS16235 0.47 +0.3 3,995,118 - ABZR88_RS16235 0.59 +1.3 3,995,412 + ABZR88_RS16235 0.72 -1.7 3,995,494 - ABZR88_RS16235 0.75 -1.4 3,995,678 + ABZR88_RS16235 0.83 +0.5 3,995,739 + ABZR88_RS16235 0.85 -1.7 3,995,742 - ABZR88_RS16235 0.85 -0.1 3,995,748 - ABZR88_RS16235 0.86 -1.0 3,995,922 - -0.9 3,996,034 - -2.7 3,996,090 - -1.7 3,996,281 + +0.4 3,996,406 - ABZR88_RS16240 0.16 -0.2 3,996,563 - ABZR88_RS16240 0.45 -0.6 3,996,568 - ABZR88_RS16240 0.46 -0.0 3,996,949 - ABZR88_RS16245 0.11 -1.3 3,996,949 - ABZR88_RS16245 0.11 -2.5 3,997,021 - ABZR88_RS16245 0.21 -1.4
Or see this region's nucleotide sequence