Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS16235

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS16230 and ABZR88_RS16235 are separated by 34 nucleotidesABZR88_RS16235 and ABZR88_RS16240 are separated by 227 nucleotidesABZR88_RS16240 and ABZR88_RS16245 are separated by 13 nucleotides ABZR88_RS16230: ABZR88_RS16230 - DNA polymerase III subunit beta, at 3,992,532 to 3,993,659 _RS16230 ABZR88_RS16235: ABZR88_RS16235 - gliding motility-associated ABC transporter substrate-binding protein GldG, at 3,993,694 to 3,996,093 _RS16235 ABZR88_RS16240: ABZR88_RS16240 - hypothetical protein, at 3,996,321 to 3,996,860 _RS16240 ABZR88_RS16245: ABZR88_RS16245 - ATP-binding cassette domain-containing protein, at 3,996,874 to 3,997,581 _RS16245 Position (kb) 3993 3994 3995 3996 3997Strain fitness (log2 ratio) -2 -1 0 1at 3993.719 kb on - strandat 3993.751 kb on + strandat 3993.751 kb on + strandat 3993.752 kb on - strandat 3993.766 kb on + strandat 3993.836 kb on - strandat 3993.931 kb on - strandat 3994.188 kb on + strand, within ABZR88_RS16235at 3994.214 kb on + strand, within ABZR88_RS16235at 3994.315 kb on + strand, within ABZR88_RS16235at 3994.343 kb on - strand, within ABZR88_RS16235at 3994.553 kb on - strand, within ABZR88_RS16235at 3994.824 kb on + strand, within ABZR88_RS16235at 3995.118 kb on - strand, within ABZR88_RS16235at 3995.412 kb on + strand, within ABZR88_RS16235at 3995.494 kb on - strand, within ABZR88_RS16235at 3995.678 kb on + strand, within ABZR88_RS16235at 3995.739 kb on + strand, within ABZR88_RS16235at 3995.742 kb on - strand, within ABZR88_RS16235at 3995.748 kb on - strand, within ABZR88_RS16235at 3995.922 kb on - strandat 3996.034 kb on - strandat 3996.090 kb on - strandat 3996.281 kb on + strandat 3996.406 kb on - strand, within ABZR88_RS16240at 3996.563 kb on - strand, within ABZR88_RS16240at 3996.568 kb on - strand, within ABZR88_RS16240at 3996.949 kb on - strand, within ABZR88_RS16245at 3996.949 kb on - strand, within ABZR88_RS16245at 3997.021 kb on - strand, within ABZR88_RS16245

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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3,993,719 - -0.3
3,993,751 + -0.3
3,993,751 + -2.4
3,993,752 - -0.7
3,993,766 + -0.5
3,993,836 - -1.1
3,993,931 - -1.6
3,994,188 + ABZR88_RS16235 0.21 -0.9
3,994,214 + ABZR88_RS16235 0.22 -1.5
3,994,315 + ABZR88_RS16235 0.26 -0.6
3,994,343 - ABZR88_RS16235 0.27 -1.2
3,994,553 - ABZR88_RS16235 0.36 -0.7
3,994,824 + ABZR88_RS16235 0.47 +0.3
3,995,118 - ABZR88_RS16235 0.59 +1.3
3,995,412 + ABZR88_RS16235 0.72 -1.7
3,995,494 - ABZR88_RS16235 0.75 -1.4
3,995,678 + ABZR88_RS16235 0.83 +0.5
3,995,739 + ABZR88_RS16235 0.85 -1.7
3,995,742 - ABZR88_RS16235 0.85 -0.1
3,995,748 - ABZR88_RS16235 0.86 -1.0
3,995,922 - -0.9
3,996,034 - -2.7
3,996,090 - -1.7
3,996,281 + +0.4
3,996,406 - ABZR88_RS16240 0.16 -0.2
3,996,563 - ABZR88_RS16240 0.45 -0.6
3,996,568 - ABZR88_RS16240 0.46 -0.0
3,996,949 - ABZR88_RS16245 0.11 -1.3
3,996,949 - ABZR88_RS16245 0.11 -2.5
3,997,021 - ABZR88_RS16245 0.21 -1.4

Or see this region's nucleotide sequence