Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS14995

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS14990 and ABZR88_RS14995 are separated by 124 nucleotidesABZR88_RS14995 and ABZR88_RS15000 overlap by 4 nucleotides ABZR88_RS14990: ABZR88_RS14990 - TolC family protein, at 3,718,285 to 3,719,532 _RS14990 ABZR88_RS14995: ABZR88_RS14995 - cell wall metabolism sensor histidine kinase WalK, at 3,719,657 to 3,721,009 _RS14995 ABZR88_RS15000: ABZR88_RS15000 - response regulator transcription factor, at 3,721,006 to 3,721,719 _RS15000 Position (kb) 3719 3720 3721 3722Strain fitness (log2 ratio) -3 -2 -1 0 1at 3718.677 kb on - strand, within ABZR88_RS14990at 3718.689 kb on - strand, within ABZR88_RS14990at 3718.701 kb on + strand, within ABZR88_RS14990at 3718.816 kb on - strand, within ABZR88_RS14990at 3718.902 kb on - strand, within ABZR88_RS14990at 3718.922 kb on - strand, within ABZR88_RS14990at 3718.927 kb on + strand, within ABZR88_RS14990at 3718.994 kb on + strand, within ABZR88_RS14990at 3718.995 kb on - strand, within ABZR88_RS14990at 3719.048 kb on + strand, within ABZR88_RS14990at 3719.068 kb on - strand, within ABZR88_RS14990at 3719.102 kb on + strand, within ABZR88_RS14990at 3719.149 kb on - strand, within ABZR88_RS14990at 3719.334 kb on - strand, within ABZR88_RS14990at 3719.408 kb on - strandat 3719.429 kb on - strandat 3719.532 kb on + strandat 3719.689 kb on + strandat 3719.732 kb on - strandat 3719.905 kb on + strand, within ABZR88_RS14995at 3719.906 kb on - strand, within ABZR88_RS14995at 3720.089 kb on + strand, within ABZR88_RS14995at 3720.281 kb on - strand, within ABZR88_RS14995at 3720.513 kb on - strand, within ABZR88_RS14995at 3720.545 kb on + strand, within ABZR88_RS14995at 3720.557 kb on - strand, within ABZR88_RS14995at 3720.587 kb on + strand, within ABZR88_RS14995at 3720.710 kb on - strand, within ABZR88_RS14995at 3720.760 kb on + strand, within ABZR88_RS14995at 3720.818 kb on + strand, within ABZR88_RS14995at 3721.066 kb on - strandat 3721.069 kb on - strandat 3721.100 kb on + strand, within ABZR88_RS15000at 3721.494 kb on + strand, within ABZR88_RS15000at 3721.607 kb on - strand, within ABZR88_RS15000at 3721.821 kb on - strandat 3721.842 kb on - strandat 3721.842 kb on - strandat 3721.897 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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3,718,677 - ABZR88_RS14990 0.31 -1.3
3,718,689 - ABZR88_RS14990 0.32 -1.9
3,718,701 + ABZR88_RS14990 0.33 +0.2
3,718,816 - ABZR88_RS14990 0.43 -1.6
3,718,902 - ABZR88_RS14990 0.49 -1.1
3,718,922 - ABZR88_RS14990 0.51 -1.7
3,718,927 + ABZR88_RS14990 0.51 -2.3
3,718,994 + ABZR88_RS14990 0.57 -1.9
3,718,995 - ABZR88_RS14990 0.57 -1.8
3,719,048 + ABZR88_RS14990 0.61 -2.8
3,719,068 - ABZR88_RS14990 0.63 -1.7
3,719,102 + ABZR88_RS14990 0.65 -1.3
3,719,149 - ABZR88_RS14990 0.69 -1.6
3,719,334 - ABZR88_RS14990 0.84 -2.1
3,719,408 - -2.4
3,719,429 - -3.3
3,719,532 + -1.2
3,719,689 + -1.4
3,719,732 - -0.1
3,719,905 + ABZR88_RS14995 0.18 -1.3
3,719,906 - ABZR88_RS14995 0.18 -1.5
3,720,089 + ABZR88_RS14995 0.32 -1.0
3,720,281 - ABZR88_RS14995 0.46 -1.8
3,720,513 - ABZR88_RS14995 0.63 -1.5
3,720,545 + ABZR88_RS14995 0.66 -1.1
3,720,557 - ABZR88_RS14995 0.67 -1.4
3,720,587 + ABZR88_RS14995 0.69 -2.6
3,720,710 - ABZR88_RS14995 0.78 -2.7
3,720,760 + ABZR88_RS14995 0.82 -1.3
3,720,818 + ABZR88_RS14995 0.86 -0.9
3,721,066 - -0.9
3,721,069 - -1.1
3,721,100 + ABZR88_RS15000 0.13 -1.9
3,721,494 + ABZR88_RS15000 0.68 -1.7
3,721,607 - ABZR88_RS15000 0.84 -1.0
3,721,821 - +0.7
3,721,842 - +0.1
3,721,842 - +0.2
3,721,897 + -0.7

Or see this region's nucleotide sequence