Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS14990 and ABZR88_RS14995 are separated by 124 nucleotides ABZR88_RS14995 and ABZR88_RS15000 overlap by 4 nucleotides
ABZR88_RS14990: ABZR88_RS14990 - TolC family protein, at 3,718,285 to 3,719,532
_RS14990
ABZR88_RS14995: ABZR88_RS14995 - cell wall metabolism sensor histidine kinase WalK, at 3,719,657 to 3,721,009
_RS14995
ABZR88_RS15000: ABZR88_RS15000 - response regulator transcription factor, at 3,721,006 to 3,721,719
_RS15000
Position (kb)
3719
3720
3721
3722 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3718.677 kb on - strand, within ABZR88_RS14990 at 3718.689 kb on - strand, within ABZR88_RS14990 at 3718.701 kb on + strand, within ABZR88_RS14990 at 3718.816 kb on - strand, within ABZR88_RS14990 at 3718.902 kb on - strand, within ABZR88_RS14990 at 3718.922 kb on - strand, within ABZR88_RS14990 at 3718.927 kb on + strand, within ABZR88_RS14990 at 3718.994 kb on + strand, within ABZR88_RS14990 at 3718.995 kb on - strand, within ABZR88_RS14990 at 3719.048 kb on + strand, within ABZR88_RS14990 at 3719.068 kb on - strand, within ABZR88_RS14990 at 3719.102 kb on + strand, within ABZR88_RS14990 at 3719.149 kb on - strand, within ABZR88_RS14990 at 3719.334 kb on - strand, within ABZR88_RS14990 at 3719.408 kb on - strand at 3719.429 kb on - strand at 3719.532 kb on + strand at 3719.689 kb on + strand at 3719.732 kb on - strand at 3719.905 kb on + strand, within ABZR88_RS14995 at 3719.906 kb on - strand, within ABZR88_RS14995 at 3720.089 kb on + strand, within ABZR88_RS14995 at 3720.281 kb on - strand, within ABZR88_RS14995 at 3720.513 kb on - strand, within ABZR88_RS14995 at 3720.545 kb on + strand, within ABZR88_RS14995 at 3720.557 kb on - strand, within ABZR88_RS14995 at 3720.587 kb on + strand, within ABZR88_RS14995 at 3720.710 kb on - strand, within ABZR88_RS14995 at 3720.760 kb on + strand, within ABZR88_RS14995 at 3720.818 kb on + strand, within ABZR88_RS14995 at 3721.066 kb on - strand at 3721.069 kb on - strand at 3721.100 kb on + strand, within ABZR88_RS15000 at 3721.494 kb on + strand, within ABZR88_RS15000 at 3721.607 kb on - strand, within ABZR88_RS15000 at 3721.821 kb on - strand at 3721.842 kb on - strand at 3721.842 kb on - strand at 3721.897 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 3,718,677 - ABZR88_RS14990 0.31 -1.3 3,718,689 - ABZR88_RS14990 0.32 -1.9 3,718,701 + ABZR88_RS14990 0.33 +0.2 3,718,816 - ABZR88_RS14990 0.43 -1.6 3,718,902 - ABZR88_RS14990 0.49 -1.1 3,718,922 - ABZR88_RS14990 0.51 -1.7 3,718,927 + ABZR88_RS14990 0.51 -2.3 3,718,994 + ABZR88_RS14990 0.57 -1.9 3,718,995 - ABZR88_RS14990 0.57 -1.8 3,719,048 + ABZR88_RS14990 0.61 -2.8 3,719,068 - ABZR88_RS14990 0.63 -1.7 3,719,102 + ABZR88_RS14990 0.65 -1.3 3,719,149 - ABZR88_RS14990 0.69 -1.6 3,719,334 - ABZR88_RS14990 0.84 -2.1 3,719,408 - -2.4 3,719,429 - -3.3 3,719,532 + -1.2 3,719,689 + -1.4 3,719,732 - -0.1 3,719,905 + ABZR88_RS14995 0.18 -1.3 3,719,906 - ABZR88_RS14995 0.18 -1.5 3,720,089 + ABZR88_RS14995 0.32 -1.0 3,720,281 - ABZR88_RS14995 0.46 -1.8 3,720,513 - ABZR88_RS14995 0.63 -1.5 3,720,545 + ABZR88_RS14995 0.66 -1.1 3,720,557 - ABZR88_RS14995 0.67 -1.4 3,720,587 + ABZR88_RS14995 0.69 -2.6 3,720,710 - ABZR88_RS14995 0.78 -2.7 3,720,760 + ABZR88_RS14995 0.82 -1.3 3,720,818 + ABZR88_RS14995 0.86 -0.9 3,721,066 - -0.9 3,721,069 - -1.1 3,721,100 + ABZR88_RS15000 0.13 -1.9 3,721,494 + ABZR88_RS15000 0.68 -1.7 3,721,607 - ABZR88_RS15000 0.84 -1.0 3,721,821 - +0.7 3,721,842 - +0.1 3,721,842 - +0.2 3,721,897 + -0.7
Or see this region's nucleotide sequence