Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS14980 and ABZR88_RS14985 are separated by 5 nucleotides ABZR88_RS14985 and ABZR88_RS14990 are separated by 38 nucleotides
ABZR88_RS14980: ABZR88_RS14980 - efflux RND transporter permease subunit, at 3,714,036 to 3,717,167
_RS14980
ABZR88_RS14985: ABZR88_RS14985 - efflux RND transporter periplasmic adaptor subunit, at 3,717,173 to 3,718,246
_RS14985
ABZR88_RS14990: ABZR88_RS14990 - TolC family protein, at 3,718,285 to 3,719,532
_RS14990
Position (kb)
3717
3718
3719 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3716.197 kb on + strand, within ABZR88_RS14980 at 3717.026 kb on + strand at 3717.026 kb on + strand at 3717.034 kb on - strand at 3717.074 kb on + strand at 3717.074 kb on + strand at 3717.299 kb on + strand, within ABZR88_RS14985 at 3717.363 kb on - strand, within ABZR88_RS14985 at 3717.363 kb on - strand, within ABZR88_RS14985 at 3717.496 kb on + strand, within ABZR88_RS14985 at 3717.497 kb on - strand, within ABZR88_RS14985 at 3717.527 kb on + strand, within ABZR88_RS14985 at 3717.550 kb on + strand, within ABZR88_RS14985 at 3717.554 kb on - strand, within ABZR88_RS14985 at 3717.768 kb on - strand, within ABZR88_RS14985 at 3717.817 kb on + strand, within ABZR88_RS14985 at 3717.856 kb on + strand, within ABZR88_RS14985 at 3717.856 kb on + strand, within ABZR88_RS14985 at 3717.957 kb on - strand, within ABZR88_RS14985 at 3718.239 kb on + strand at 3718.265 kb on - strand at 3718.287 kb on - strand at 3718.479 kb on + strand, within ABZR88_RS14990 at 3718.603 kb on + strand, within ABZR88_RS14990 at 3718.677 kb on - strand, within ABZR88_RS14990 at 3718.689 kb on - strand, within ABZR88_RS14990 at 3718.701 kb on + strand, within ABZR88_RS14990 at 3718.816 kb on - strand, within ABZR88_RS14990 at 3718.902 kb on - strand, within ABZR88_RS14990 at 3718.922 kb on - strand, within ABZR88_RS14990 at 3718.927 kb on + strand, within ABZR88_RS14990 at 3718.994 kb on + strand, within ABZR88_RS14990 at 3718.995 kb on - strand, within ABZR88_RS14990 at 3719.048 kb on + strand, within ABZR88_RS14990 at 3719.068 kb on - strand, within ABZR88_RS14990 at 3719.102 kb on + strand, within ABZR88_RS14990 at 3719.149 kb on - strand, within ABZR88_RS14990
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 3,716,197 + ABZR88_RS14980 0.69 -2.3 3,717,026 + -2.3 3,717,026 + -1.8 3,717,034 - -2.1 3,717,074 + -2.1 3,717,074 + -1.4 3,717,299 + ABZR88_RS14985 0.12 -2.1 3,717,363 - ABZR88_RS14985 0.18 -1.7 3,717,363 - ABZR88_RS14985 0.18 -1.5 3,717,496 + ABZR88_RS14985 0.30 -1.8 3,717,497 - ABZR88_RS14985 0.30 -1.8 3,717,527 + ABZR88_RS14985 0.33 -2.6 3,717,550 + ABZR88_RS14985 0.35 -2.0 3,717,554 - ABZR88_RS14985 0.35 -3.1 3,717,768 - ABZR88_RS14985 0.55 -0.7 3,717,817 + ABZR88_RS14985 0.60 -2.1 3,717,856 + ABZR88_RS14985 0.64 -0.8 3,717,856 + ABZR88_RS14985 0.64 -1.1 3,717,957 - ABZR88_RS14985 0.73 -2.0 3,718,239 + -2.0 3,718,265 - -1.7 3,718,287 - +0.1 3,718,479 + ABZR88_RS14990 0.16 -2.0 3,718,603 + ABZR88_RS14990 0.25 -2.2 3,718,677 - ABZR88_RS14990 0.31 -1.3 3,718,689 - ABZR88_RS14990 0.32 -1.9 3,718,701 + ABZR88_RS14990 0.33 +0.2 3,718,816 - ABZR88_RS14990 0.43 -1.6 3,718,902 - ABZR88_RS14990 0.49 -1.1 3,718,922 - ABZR88_RS14990 0.51 -1.7 3,718,927 + ABZR88_RS14990 0.51 -2.3 3,718,994 + ABZR88_RS14990 0.57 -1.9 3,718,995 - ABZR88_RS14990 0.57 -1.8 3,719,048 + ABZR88_RS14990 0.61 -2.8 3,719,068 - ABZR88_RS14990 0.63 -1.7 3,719,102 + ABZR88_RS14990 0.65 -1.3 3,719,149 - ABZR88_RS14990 0.69 -1.6
Or see this region's nucleotide sequence