Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS14980

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS14975 and ABZR88_RS14980 are separated by 258 nucleotidesABZR88_RS14980 and ABZR88_RS14985 are separated by 5 nucleotides ABZR88_RS14975: ABZR88_RS14975 - dihydrofolate reductase family protein, at 3,713,184 to 3,713,777 _RS14975 ABZR88_RS14980: ABZR88_RS14980 - efflux RND transporter permease subunit, at 3,714,036 to 3,717,167 _RS14980 ABZR88_RS14985: ABZR88_RS14985 - efflux RND transporter periplasmic adaptor subunit, at 3,717,173 to 3,718,246 _RS14985 Position (kb) 3714 3715 3716 3717 3718Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3713.278 kb on - strand, within ABZR88_RS14975at 3713.435 kb on - strand, within ABZR88_RS14975at 3713.629 kb on + strand, within ABZR88_RS14975at 3713.630 kb on - strand, within ABZR88_RS14975at 3713.632 kb on + strand, within ABZR88_RS14975at 3713.685 kb on - strand, within ABZR88_RS14975at 3713.706 kb on - strand, within ABZR88_RS14975at 3713.945 kb on - strandat 3714.037 kb on + strandat 3714.051 kb on + strandat 3714.302 kb on + strandat 3714.303 kb on - strandat 3714.395 kb on + strand, within ABZR88_RS14980at 3714.453 kb on - strand, within ABZR88_RS14980at 3714.465 kb on + strand, within ABZR88_RS14980at 3715.107 kb on - strand, within ABZR88_RS14980at 3715.146 kb on + strand, within ABZR88_RS14980at 3715.311 kb on - strand, within ABZR88_RS14980at 3715.443 kb on - strand, within ABZR88_RS14980at 3715.517 kb on + strand, within ABZR88_RS14980at 3715.517 kb on + strand, within ABZR88_RS14980at 3715.518 kb on - strand, within ABZR88_RS14980at 3715.618 kb on - strand, within ABZR88_RS14980at 3715.767 kb on + strand, within ABZR88_RS14980at 3715.805 kb on + strand, within ABZR88_RS14980at 3715.929 kb on + strand, within ABZR88_RS14980at 3716.197 kb on + strand, within ABZR88_RS14980at 3717.026 kb on + strandat 3717.026 kb on + strandat 3717.034 kb on - strandat 3717.074 kb on + strandat 3717.074 kb on + strandat 3717.299 kb on + strand, within ABZR88_RS14985at 3717.363 kb on - strand, within ABZR88_RS14985at 3717.363 kb on - strand, within ABZR88_RS14985at 3717.496 kb on + strand, within ABZR88_RS14985at 3717.497 kb on - strand, within ABZR88_RS14985at 3717.527 kb on + strand, within ABZR88_RS14985at 3717.550 kb on + strand, within ABZR88_RS14985at 3717.554 kb on - strand, within ABZR88_RS14985at 3717.768 kb on - strand, within ABZR88_RS14985at 3717.817 kb on + strand, within ABZR88_RS14985at 3717.856 kb on + strand, within ABZR88_RS14985at 3717.856 kb on + strand, within ABZR88_RS14985at 3717.957 kb on - strand, within ABZR88_RS14985

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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3,713,278 - ABZR88_RS14975 0.16 -0.6
3,713,435 - ABZR88_RS14975 0.42 -0.4
3,713,629 + ABZR88_RS14975 0.75 +0.5
3,713,630 - ABZR88_RS14975 0.75 -0.0
3,713,632 + ABZR88_RS14975 0.75 +0.5
3,713,685 - ABZR88_RS14975 0.84 +0.4
3,713,706 - ABZR88_RS14975 0.88 -2.2
3,713,945 - -0.8
3,714,037 + +1.7
3,714,051 + -0.9
3,714,302 + -3.2
3,714,303 - -6.1
3,714,395 + ABZR88_RS14980 0.11 -2.4
3,714,453 - ABZR88_RS14980 0.13 -2.8
3,714,465 + ABZR88_RS14980 0.14 -2.6
3,715,107 - ABZR88_RS14980 0.34 -2.6
3,715,146 + ABZR88_RS14980 0.35 -0.8
3,715,311 - ABZR88_RS14980 0.41 -2.1
3,715,443 - ABZR88_RS14980 0.45 -0.3
3,715,517 + ABZR88_RS14980 0.47 -2.2
3,715,517 + ABZR88_RS14980 0.47 -2.3
3,715,518 - ABZR88_RS14980 0.47 -2.7
3,715,618 - ABZR88_RS14980 0.51 -3.2
3,715,767 + ABZR88_RS14980 0.55 -2.2
3,715,805 + ABZR88_RS14980 0.56 -2.2
3,715,929 + ABZR88_RS14980 0.60 -1.8
3,716,197 + ABZR88_RS14980 0.69 -2.3
3,717,026 + -2.3
3,717,026 + -1.8
3,717,034 - -2.1
3,717,074 + -2.1
3,717,074 + -1.4
3,717,299 + ABZR88_RS14985 0.12 -2.1
3,717,363 - ABZR88_RS14985 0.18 -1.7
3,717,363 - ABZR88_RS14985 0.18 -1.5
3,717,496 + ABZR88_RS14985 0.30 -1.8
3,717,497 - ABZR88_RS14985 0.30 -1.8
3,717,527 + ABZR88_RS14985 0.33 -2.6
3,717,550 + ABZR88_RS14985 0.35 -2.0
3,717,554 - ABZR88_RS14985 0.35 -3.1
3,717,768 - ABZR88_RS14985 0.55 -0.7
3,717,817 + ABZR88_RS14985 0.60 -2.1
3,717,856 + ABZR88_RS14985 0.64 -0.8
3,717,856 + ABZR88_RS14985 0.64 -1.1
3,717,957 - ABZR88_RS14985 0.73 -2.0

Or see this region's nucleotide sequence