Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS14975 and ABZR88_RS14980 are separated by 258 nucleotides ABZR88_RS14980 and ABZR88_RS14985 are separated by 5 nucleotides
ABZR88_RS14975: ABZR88_RS14975 - dihydrofolate reductase family protein, at 3,713,184 to 3,713,777
_RS14975
ABZR88_RS14980: ABZR88_RS14980 - efflux RND transporter permease subunit, at 3,714,036 to 3,717,167
_RS14980
ABZR88_RS14985: ABZR88_RS14985 - efflux RND transporter periplasmic adaptor subunit, at 3,717,173 to 3,718,246
_RS14985
Position (kb)
3714
3715
3716
3717
3718 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3713.278 kb on - strand, within ABZR88_RS14975 at 3713.435 kb on - strand, within ABZR88_RS14975 at 3713.629 kb on + strand, within ABZR88_RS14975 at 3713.630 kb on - strand, within ABZR88_RS14975 at 3713.632 kb on + strand, within ABZR88_RS14975 at 3713.685 kb on - strand, within ABZR88_RS14975 at 3713.706 kb on - strand, within ABZR88_RS14975 at 3713.945 kb on - strand at 3714.037 kb on + strand at 3714.051 kb on + strand at 3714.302 kb on + strand at 3714.303 kb on - strand at 3714.395 kb on + strand, within ABZR88_RS14980 at 3714.453 kb on - strand, within ABZR88_RS14980 at 3714.465 kb on + strand, within ABZR88_RS14980 at 3715.107 kb on - strand, within ABZR88_RS14980 at 3715.146 kb on + strand, within ABZR88_RS14980 at 3715.311 kb on - strand, within ABZR88_RS14980 at 3715.443 kb on - strand, within ABZR88_RS14980 at 3715.517 kb on + strand, within ABZR88_RS14980 at 3715.517 kb on + strand, within ABZR88_RS14980 at 3715.518 kb on - strand, within ABZR88_RS14980 at 3715.618 kb on - strand, within ABZR88_RS14980 at 3715.767 kb on + strand, within ABZR88_RS14980 at 3715.805 kb on + strand, within ABZR88_RS14980 at 3715.929 kb on + strand, within ABZR88_RS14980 at 3716.197 kb on + strand, within ABZR88_RS14980 at 3717.026 kb on + strand at 3717.026 kb on + strand at 3717.034 kb on - strand at 3717.074 kb on + strand at 3717.074 kb on + strand at 3717.299 kb on + strand, within ABZR88_RS14985 at 3717.363 kb on - strand, within ABZR88_RS14985 at 3717.363 kb on - strand, within ABZR88_RS14985 at 3717.496 kb on + strand, within ABZR88_RS14985 at 3717.497 kb on - strand, within ABZR88_RS14985 at 3717.527 kb on + strand, within ABZR88_RS14985 at 3717.550 kb on + strand, within ABZR88_RS14985 at 3717.554 kb on - strand, within ABZR88_RS14985 at 3717.768 kb on - strand, within ABZR88_RS14985 at 3717.817 kb on + strand, within ABZR88_RS14985 at 3717.856 kb on + strand, within ABZR88_RS14985 at 3717.856 kb on + strand, within ABZR88_RS14985 at 3717.957 kb on - strand, within ABZR88_RS14985
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 3,713,278 - ABZR88_RS14975 0.16 -0.6 3,713,435 - ABZR88_RS14975 0.42 -0.4 3,713,629 + ABZR88_RS14975 0.75 +0.5 3,713,630 - ABZR88_RS14975 0.75 -0.0 3,713,632 + ABZR88_RS14975 0.75 +0.5 3,713,685 - ABZR88_RS14975 0.84 +0.4 3,713,706 - ABZR88_RS14975 0.88 -2.2 3,713,945 - -0.8 3,714,037 + +1.7 3,714,051 + -0.9 3,714,302 + -3.2 3,714,303 - -6.1 3,714,395 + ABZR88_RS14980 0.11 -2.4 3,714,453 - ABZR88_RS14980 0.13 -2.8 3,714,465 + ABZR88_RS14980 0.14 -2.6 3,715,107 - ABZR88_RS14980 0.34 -2.6 3,715,146 + ABZR88_RS14980 0.35 -0.8 3,715,311 - ABZR88_RS14980 0.41 -2.1 3,715,443 - ABZR88_RS14980 0.45 -0.3 3,715,517 + ABZR88_RS14980 0.47 -2.2 3,715,517 + ABZR88_RS14980 0.47 -2.3 3,715,518 - ABZR88_RS14980 0.47 -2.7 3,715,618 - ABZR88_RS14980 0.51 -3.2 3,715,767 + ABZR88_RS14980 0.55 -2.2 3,715,805 + ABZR88_RS14980 0.56 -2.2 3,715,929 + ABZR88_RS14980 0.60 -1.8 3,716,197 + ABZR88_RS14980 0.69 -2.3 3,717,026 + -2.3 3,717,026 + -1.8 3,717,034 - -2.1 3,717,074 + -2.1 3,717,074 + -1.4 3,717,299 + ABZR88_RS14985 0.12 -2.1 3,717,363 - ABZR88_RS14985 0.18 -1.7 3,717,363 - ABZR88_RS14985 0.18 -1.5 3,717,496 + ABZR88_RS14985 0.30 -1.8 3,717,497 - ABZR88_RS14985 0.30 -1.8 3,717,527 + ABZR88_RS14985 0.33 -2.6 3,717,550 + ABZR88_RS14985 0.35 -2.0 3,717,554 - ABZR88_RS14985 0.35 -3.1 3,717,768 - ABZR88_RS14985 0.55 -0.7 3,717,817 + ABZR88_RS14985 0.60 -2.1 3,717,856 + ABZR88_RS14985 0.64 -0.8 3,717,856 + ABZR88_RS14985 0.64 -1.1 3,717,957 - ABZR88_RS14985 0.73 -2.0
Or see this region's nucleotide sequence