Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS14550

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS14540 and ABZR88_RS14545 are separated by 1 nucleotidesABZR88_RS14545 and ABZR88_RS14550 are separated by 112 nucleotidesABZR88_RS14550 and ABZR88_RS14555 are separated by 111 nucleotidesABZR88_RS14555 and ABZR88_RS14560 are separated by 124 nucleotides ABZR88_RS14540: ABZR88_RS14540 - sulfotransferase, at 3,597,182 to 3,598,336 _RS14540 ABZR88_RS14545: ABZR88_RS14545 - adenylyl-sulfate kinase, at 3,598,338 to 3,598,940 _RS14545 ABZR88_RS14550: ABZR88_RS14550 - 7TM diverse intracellular signaling domain-containing protein, at 3,599,053 to 3,601,197 _RS14550 ABZR88_RS14555: ABZR88_RS14555 - response regulator, at 3,601,309 to 3,601,752 _RS14555 ABZR88_RS14560: ABZR88_RS14560 - PKD domain-containing protein, at 3,601,877 to 3,605,482 _RS14560 Position (kb) 3599 3600 3601 3602Strain fitness (log2 ratio) -2 -1 0 1 2at 3598.296 kb on - strandat 3598.430 kb on + strand, within ABZR88_RS14545at 3598.761 kb on + strand, within ABZR88_RS14545at 3598.821 kb on - strand, within ABZR88_RS14545at 3598.954 kb on - strandat 3598.963 kb on + strandat 3599.054 kb on + strandat 3599.319 kb on - strand, within ABZR88_RS14550at 3599.334 kb on + strand, within ABZR88_RS14550at 3599.480 kb on - strand, within ABZR88_RS14550at 3599.495 kb on - strand, within ABZR88_RS14550at 3599.667 kb on + strand, within ABZR88_RS14550at 3599.787 kb on + strand, within ABZR88_RS14550at 3599.821 kb on + strand, within ABZR88_RS14550at 3599.908 kb on - strand, within ABZR88_RS14550at 3599.931 kb on + strand, within ABZR88_RS14550at 3599.931 kb on + strand, within ABZR88_RS14550at 3600.003 kb on + strand, within ABZR88_RS14550at 3600.052 kb on - strand, within ABZR88_RS14550at 3600.067 kb on + strand, within ABZR88_RS14550at 3600.102 kb on - strand, within ABZR88_RS14550at 3600.132 kb on - strand, within ABZR88_RS14550at 3600.265 kb on - strand, within ABZR88_RS14550at 3600.343 kb on + strand, within ABZR88_RS14550at 3600.478 kb on - strand, within ABZR88_RS14550at 3600.478 kb on - strand, within ABZR88_RS14550at 3600.556 kb on + strand, within ABZR88_RS14550at 3600.560 kb on + strand, within ABZR88_RS14550at 3600.560 kb on + strand, within ABZR88_RS14550at 3600.564 kb on + strand, within ABZR88_RS14550at 3600.579 kb on - strand, within ABZR88_RS14550at 3600.658 kb on + strand, within ABZR88_RS14550at 3600.677 kb on - strand, within ABZR88_RS14550at 3600.720 kb on + strand, within ABZR88_RS14550at 3600.786 kb on - strand, within ABZR88_RS14550at 3600.921 kb on + strand, within ABZR88_RS14550at 3600.922 kb on - strand, within ABZR88_RS14550at 3600.926 kb on - strand, within ABZR88_RS14550at 3601.000 kb on + strandat 3601.216 kb on - strandat 3601.506 kb on + strand, within ABZR88_RS14555at 3601.507 kb on - strand, within ABZR88_RS14555at 3601.509 kb on - strand, within ABZR88_RS14555at 3601.645 kb on + strand, within ABZR88_RS14555at 3601.798 kb on + strandat 3601.799 kb on - strandat 3601.861 kb on + strandat 3602.045 kb on - strandat 3602.047 kb on + strandat 3602.191 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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3,598,296 - +0.2
3,598,430 + ABZR88_RS14545 0.15 -1.3
3,598,761 + ABZR88_RS14545 0.70 -0.2
3,598,821 - ABZR88_RS14545 0.80 +0.1
3,598,954 - -0.0
3,598,963 + +0.2
3,599,054 + -0.6
3,599,319 - ABZR88_RS14550 0.12 -1.3
3,599,334 + ABZR88_RS14550 0.13 -0.8
3,599,480 - ABZR88_RS14550 0.20 -1.5
3,599,495 - ABZR88_RS14550 0.21 -0.8
3,599,667 + ABZR88_RS14550 0.29 -1.1
3,599,787 + ABZR88_RS14550 0.34 -0.4
3,599,821 + ABZR88_RS14550 0.36 -0.8
3,599,908 - ABZR88_RS14550 0.40 -0.3
3,599,931 + ABZR88_RS14550 0.41 -0.3
3,599,931 + ABZR88_RS14550 0.41 -0.4
3,600,003 + ABZR88_RS14550 0.44 -1.7
3,600,052 - ABZR88_RS14550 0.47 -1.0
3,600,067 + ABZR88_RS14550 0.47 -0.5
3,600,102 - ABZR88_RS14550 0.49 -1.2
3,600,132 - ABZR88_RS14550 0.50 -0.5
3,600,265 - ABZR88_RS14550 0.57 -0.3
3,600,343 + ABZR88_RS14550 0.60 -0.5
3,600,478 - ABZR88_RS14550 0.66 -1.1
3,600,478 - ABZR88_RS14550 0.66 -0.6
3,600,556 + ABZR88_RS14550 0.70 -0.5
3,600,560 + ABZR88_RS14550 0.70 -0.6
3,600,560 + ABZR88_RS14550 0.70 -2.7
3,600,564 + ABZR88_RS14550 0.70 -0.7
3,600,579 - ABZR88_RS14550 0.71 +1.1
3,600,658 + ABZR88_RS14550 0.75 +0.6
3,600,677 - ABZR88_RS14550 0.76 -1.1
3,600,720 + ABZR88_RS14550 0.78 -1.0
3,600,786 - ABZR88_RS14550 0.81 +1.8
3,600,921 + ABZR88_RS14550 0.87 -0.4
3,600,922 - ABZR88_RS14550 0.87 -0.5
3,600,926 - ABZR88_RS14550 0.87 -0.8
3,601,000 + -1.6
3,601,216 - +1.2
3,601,506 + ABZR88_RS14555 0.44 +0.1
3,601,507 - ABZR88_RS14555 0.45 -0.5
3,601,509 - ABZR88_RS14555 0.45 -0.1
3,601,645 + ABZR88_RS14555 0.76 -0.6
3,601,798 + +0.5
3,601,799 - +1.7
3,601,861 + -0.3
3,602,045 - +0.2
3,602,047 + -0.0
3,602,191 + +0.1

Or see this region's nucleotide sequence