Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS13945

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS13940 and ABZR88_RS13945 are separated by 38 nucleotidesABZR88_RS13945 and ABZR88_RS13950 are separated by 18 nucleotidesABZR88_RS13950 and ABZR88_RS13955 are separated by 16 nucleotides ABZR88_RS13940: ABZR88_RS13940 - glycosyltransferase family 9 protein, at 3,473,242 to 3,474,213 _RS13940 ABZR88_RS13945: ABZR88_RS13945 - porin family protein, at 3,474,252 to 3,474,878 _RS13945 ABZR88_RS13950: ABZR88_RS13950 - histidine phosphatase family protein, at 3,474,897 to 3,475,385 _RS13950 ABZR88_RS13955: ABZR88_RS13955 - DNA-processing protein DprA, at 3,475,402 to 3,476,502 _RS13955 Position (kb) 3474 3475Strain fitness (log2 ratio) -3 -2 -1 0 1at 3473.284 kb on - strandat 3473.368 kb on + strand, within ABZR88_RS13940at 3473.375 kb on - strand, within ABZR88_RS13940at 3473.436 kb on - strand, within ABZR88_RS13940at 3473.536 kb on + strand, within ABZR88_RS13940at 3473.537 kb on - strand, within ABZR88_RS13940at 3473.614 kb on - strand, within ABZR88_RS13940at 3473.676 kb on + strand, within ABZR88_RS13940at 3474.042 kb on - strand, within ABZR88_RS13940at 3474.209 kb on + strandat 3474.210 kb on - strandat 3474.353 kb on + strand, within ABZR88_RS13945at 3474.429 kb on + strand, within ABZR88_RS13945at 3474.430 kb on - strand, within ABZR88_RS13945at 3474.567 kb on - strand, within ABZR88_RS13945at 3474.609 kb on + strand, within ABZR88_RS13945at 3474.767 kb on + strand, within ABZR88_RS13945at 3474.893 kb on - strandat 3475.199 kb on - strand, within ABZR88_RS13950at 3475.265 kb on + strand, within ABZR88_RS13950at 3475.266 kb on - strand, within ABZR88_RS13950at 3475.266 kb on - strand, within ABZR88_RS13950at 3475.417 kb on - strandat 3475.417 kb on - strandat 3475.418 kb on + strandat 3475.419 kb on - strandat 3475.480 kb on + strandat 3475.567 kb on - strand, within ABZR88_RS13955at 3475.725 kb on + strand, within ABZR88_RS13955

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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3,473,284 - +0.6
3,473,368 + ABZR88_RS13940 0.13 -0.7
3,473,375 - ABZR88_RS13940 0.14 -1.4
3,473,436 - ABZR88_RS13940 0.20 -1.1
3,473,536 + ABZR88_RS13940 0.30 -0.5
3,473,537 - ABZR88_RS13940 0.30 -3.1
3,473,614 - ABZR88_RS13940 0.38 -2.3
3,473,676 + ABZR88_RS13940 0.45 +1.2
3,474,042 - ABZR88_RS13940 0.82 -1.0
3,474,209 + -0.3
3,474,210 - -1.1
3,474,353 + ABZR88_RS13945 0.16 -1.5
3,474,429 + ABZR88_RS13945 0.28 -0.2
3,474,430 - ABZR88_RS13945 0.28 -0.8
3,474,567 - ABZR88_RS13945 0.50 -0.2
3,474,609 + ABZR88_RS13945 0.57 -0.5
3,474,767 + ABZR88_RS13945 0.82 -0.8
3,474,893 - +0.1
3,475,199 - ABZR88_RS13950 0.62 +0.0
3,475,265 + ABZR88_RS13950 0.75 +0.6
3,475,266 - ABZR88_RS13950 0.75 +0.4
3,475,266 - ABZR88_RS13950 0.75 -0.5
3,475,417 - -0.3
3,475,417 - -0.2
3,475,418 + -0.1
3,475,419 - -0.6
3,475,480 + +0.5
3,475,567 - ABZR88_RS13955 0.15 -0.7
3,475,725 + ABZR88_RS13955 0.29 -0.8

Or see this region's nucleotide sequence