Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS12660 and ABZR88_RS12665 are separated by 9 nucleotides ABZR88_RS12665 and ABZR88_RS12670 are separated by 92 nucleotides ABZR88_RS12670 and ABZR88_RS12675 are separated by 135 nucleotides
ABZR88_RS12660: ABZR88_RS12660 - CHAD domain-containing protein, at 3,115,682 to 3,116,458
_RS12660
ABZR88_RS12665: ABZR88_RS12665 - 4a-hydroxytetrahydrobiopterin dehydratase, at 3,116,468 to 3,116,698
_RS12665
ABZR88_RS12670: ABZR88_RS12670 - Rrf2 family transcriptional regulator, at 3,116,791 to 3,117,228
_RS12670
ABZR88_RS12675: ABZR88_RS12675 - NO-inducible flavohemoprotein, at 3,117,364 to 3,118,581
_RS12675
Position (kb)
3116
3117 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3115.731 kb on + strand at 3115.732 kb on - strand at 3115.735 kb on + strand at 3115.786 kb on + strand, within ABZR88_RS12660 at 3115.792 kb on + strand, within ABZR88_RS12660 at 3115.792 kb on + strand, within ABZR88_RS12660 at 3115.828 kb on + strand, within ABZR88_RS12660 at 3115.828 kb on + strand, within ABZR88_RS12660 at 3115.882 kb on - strand, within ABZR88_RS12660 at 3115.900 kb on + strand, within ABZR88_RS12660 at 3115.987 kb on + strand, within ABZR88_RS12660 at 3116.020 kb on + strand, within ABZR88_RS12660 at 3116.056 kb on + strand, within ABZR88_RS12660 at 3116.097 kb on - strand, within ABZR88_RS12660 at 3116.330 kb on - strand, within ABZR88_RS12660 at 3116.438 kb on + strand at 3116.565 kb on + strand, within ABZR88_RS12665 at 3116.588 kb on + strand, within ABZR88_RS12665 at 3117.394 kb on - strand at 3117.394 kb on - strand at 3117.451 kb on + strand at 3117.556 kb on + strand, within ABZR88_RS12675 at 3117.654 kb on + strand, within ABZR88_RS12675
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 3,115,731 + -0.1 3,115,732 - +0.0 3,115,735 + +2.5 3,115,786 + ABZR88_RS12660 0.13 +0.6 3,115,792 + ABZR88_RS12660 0.14 +0.3 3,115,792 + ABZR88_RS12660 0.14 +0.2 3,115,828 + ABZR88_RS12660 0.19 -0.1 3,115,828 + ABZR88_RS12660 0.19 -0.1 3,115,882 - ABZR88_RS12660 0.26 -0.3 3,115,900 + ABZR88_RS12660 0.28 +0.3 3,115,987 + ABZR88_RS12660 0.39 -0.2 3,116,020 + ABZR88_RS12660 0.44 -0.5 3,116,056 + ABZR88_RS12660 0.48 -1.7 3,116,097 - ABZR88_RS12660 0.53 -0.0 3,116,330 - ABZR88_RS12660 0.83 +3.5 3,116,438 + -0.1 3,116,565 + ABZR88_RS12665 0.42 -1.2 3,116,588 + ABZR88_RS12665 0.52 -0.7 3,117,394 - -0.5 3,117,394 - +0.5 3,117,451 + -0.1 3,117,556 + ABZR88_RS12675 0.16 +0.7 3,117,654 + ABZR88_RS12675 0.24 -0.2
Or see this region's nucleotide sequence