Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12665

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS12660 and ABZR88_RS12665 are separated by 9 nucleotidesABZR88_RS12665 and ABZR88_RS12670 are separated by 92 nucleotidesABZR88_RS12670 and ABZR88_RS12675 are separated by 135 nucleotides ABZR88_RS12660: ABZR88_RS12660 - CHAD domain-containing protein, at 3,115,682 to 3,116,458 _RS12660 ABZR88_RS12665: ABZR88_RS12665 - 4a-hydroxytetrahydrobiopterin dehydratase, at 3,116,468 to 3,116,698 _RS12665 ABZR88_RS12670: ABZR88_RS12670 - Rrf2 family transcriptional regulator, at 3,116,791 to 3,117,228 _RS12670 ABZR88_RS12675: ABZR88_RS12675 - NO-inducible flavohemoprotein, at 3,117,364 to 3,118,581 _RS12675 Position (kb) 3116 3117Strain fitness (log2 ratio) -1 0 1 2 3at 3115.731 kb on + strandat 3115.732 kb on - strandat 3115.735 kb on + strandat 3115.786 kb on + strand, within ABZR88_RS12660at 3115.792 kb on + strand, within ABZR88_RS12660at 3115.792 kb on + strand, within ABZR88_RS12660at 3115.828 kb on + strand, within ABZR88_RS12660at 3115.828 kb on + strand, within ABZR88_RS12660at 3115.882 kb on - strand, within ABZR88_RS12660at 3115.900 kb on + strand, within ABZR88_RS12660at 3115.987 kb on + strand, within ABZR88_RS12660at 3116.020 kb on + strand, within ABZR88_RS12660at 3116.056 kb on + strand, within ABZR88_RS12660at 3116.097 kb on - strand, within ABZR88_RS12660at 3116.330 kb on - strand, within ABZR88_RS12660at 3116.438 kb on + strandat 3116.565 kb on + strand, within ABZR88_RS12665at 3116.588 kb on + strand, within ABZR88_RS12665at 3117.394 kb on - strandat 3117.394 kb on - strandat 3117.451 kb on + strandat 3117.556 kb on + strand, within ABZR88_RS12675at 3117.654 kb on + strand, within ABZR88_RS12675

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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3,115,731 + -0.1
3,115,732 - +0.0
3,115,735 + +2.5
3,115,786 + ABZR88_RS12660 0.13 +0.6
3,115,792 + ABZR88_RS12660 0.14 +0.3
3,115,792 + ABZR88_RS12660 0.14 +0.2
3,115,828 + ABZR88_RS12660 0.19 -0.1
3,115,828 + ABZR88_RS12660 0.19 -0.1
3,115,882 - ABZR88_RS12660 0.26 -0.3
3,115,900 + ABZR88_RS12660 0.28 +0.3
3,115,987 + ABZR88_RS12660 0.39 -0.2
3,116,020 + ABZR88_RS12660 0.44 -0.5
3,116,056 + ABZR88_RS12660 0.48 -1.7
3,116,097 - ABZR88_RS12660 0.53 -0.0
3,116,330 - ABZR88_RS12660 0.83 +3.5
3,116,438 + -0.1
3,116,565 + ABZR88_RS12665 0.42 -1.2
3,116,588 + ABZR88_RS12665 0.52 -0.7
3,117,394 - -0.5
3,117,394 - +0.5
3,117,451 + -0.1
3,117,556 + ABZR88_RS12675 0.16 +0.7
3,117,654 + ABZR88_RS12675 0.24 -0.2

Or see this region's nucleotide sequence