Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12460

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS12455 and ABZR88_RS12460 are separated by 122 nucleotidesABZR88_RS12460 and ABZR88_RS12465 are separated by 9 nucleotidesABZR88_RS12465 and ABZR88_RS12470 are separated by 6 nucleotides ABZR88_RS12455: ABZR88_RS12455 - NUDIX domain-containing protein, at 3,068,408 to 3,069,103 _RS12455 ABZR88_RS12460: ABZR88_RS12460 - 6-phosphofructokinase, at 3,069,226 to 3,070,212 _RS12460 ABZR88_RS12465: ABZR88_RS12465 - hypothetical protein, at 3,070,222 to 3,071,070 _RS12465 ABZR88_RS12470: ABZR88_RS12470 - type I glyceraldehyde-3-phosphate dehydrogenase, at 3,071,077 to 3,072,072 _RS12470 Position (kb) 3069 3070 3071Strain fitness (log2 ratio) -2 -1 0 1at 3068.317 kb on - strandat 3068.372 kb on + strandat 3068.593 kb on - strand, within ABZR88_RS12455at 3068.612 kb on - strand, within ABZR88_RS12455at 3068.828 kb on - strand, within ABZR88_RS12455at 3068.921 kb on - strand, within ABZR88_RS12455at 3068.962 kb on + strand, within ABZR88_RS12455at 3069.121 kb on + strandat 3069.123 kb on + strandat 3069.646 kb on - strand, within ABZR88_RS12460at 3069.783 kb on + strand, within ABZR88_RS12460at 3069.929 kb on - strand, within ABZR88_RS12460at 3069.975 kb on - strand, within ABZR88_RS12460at 3069.990 kb on - strand, within ABZR88_RS12460at 3070.236 kb on - strandat 3070.491 kb on + strand, within ABZR88_RS12465at 3071.045 kb on + strandat 3071.055 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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3,068,317 - -0.9
3,068,372 + -0.9
3,068,593 - ABZR88_RS12455 0.27 -1.9
3,068,612 - ABZR88_RS12455 0.29 -0.5
3,068,828 - ABZR88_RS12455 0.60 -1.1
3,068,921 - ABZR88_RS12455 0.74 -2.2
3,068,962 + ABZR88_RS12455 0.80 -1.3
3,069,121 + -0.5
3,069,123 + -0.3
3,069,646 - ABZR88_RS12460 0.43 -0.9
3,069,783 + ABZR88_RS12460 0.56 -1.1
3,069,929 - ABZR88_RS12460 0.71 -0.2
3,069,975 - ABZR88_RS12460 0.76 -1.4
3,069,990 - ABZR88_RS12460 0.77 -0.8
3,070,236 - -0.4
3,070,491 + ABZR88_RS12465 0.32 -1.4
3,071,045 + -0.0
3,071,055 + -0.2

Or see this region's nucleotide sequence