Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS12455 and ABZR88_RS12460 are separated by 122 nucleotides ABZR88_RS12460 and ABZR88_RS12465 are separated by 9 nucleotides ABZR88_RS12465 and ABZR88_RS12470 are separated by 6 nucleotides
ABZR88_RS12455: ABZR88_RS12455 - NUDIX domain-containing protein, at 3,068,408 to 3,069,103
_RS12455
ABZR88_RS12460: ABZR88_RS12460 - 6-phosphofructokinase, at 3,069,226 to 3,070,212
_RS12460
ABZR88_RS12465: ABZR88_RS12465 - hypothetical protein, at 3,070,222 to 3,071,070
_RS12465
ABZR88_RS12470: ABZR88_RS12470 - type I glyceraldehyde-3-phosphate dehydrogenase, at 3,071,077 to 3,072,072
_RS12470
Position (kb)
3069
3070
3071 Strain fitness (log2 ratio)
-2
-1
0
1 at 3068.317 kb on - strand at 3068.372 kb on + strand at 3068.593 kb on - strand, within ABZR88_RS12455 at 3068.612 kb on - strand, within ABZR88_RS12455 at 3068.828 kb on - strand, within ABZR88_RS12455 at 3068.921 kb on - strand, within ABZR88_RS12455 at 3068.962 kb on + strand, within ABZR88_RS12455 at 3069.121 kb on + strand at 3069.123 kb on + strand at 3069.646 kb on - strand, within ABZR88_RS12460 at 3069.783 kb on + strand, within ABZR88_RS12460 at 3069.929 kb on - strand, within ABZR88_RS12460 at 3069.975 kb on - strand, within ABZR88_RS12460 at 3069.990 kb on - strand, within ABZR88_RS12460 at 3070.236 kb on - strand at 3070.491 kb on + strand, within ABZR88_RS12465 at 3071.045 kb on + strand at 3071.055 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 3,068,317 - -0.9 3,068,372 + -0.9 3,068,593 - ABZR88_RS12455 0.27 -1.9 3,068,612 - ABZR88_RS12455 0.29 -0.5 3,068,828 - ABZR88_RS12455 0.60 -1.1 3,068,921 - ABZR88_RS12455 0.74 -2.2 3,068,962 + ABZR88_RS12455 0.80 -1.3 3,069,121 + -0.5 3,069,123 + -0.3 3,069,646 - ABZR88_RS12460 0.43 -0.9 3,069,783 + ABZR88_RS12460 0.56 -1.1 3,069,929 - ABZR88_RS12460 0.71 -0.2 3,069,975 - ABZR88_RS12460 0.76 -1.4 3,069,990 - ABZR88_RS12460 0.77 -0.8 3,070,236 - -0.4 3,070,491 + ABZR88_RS12465 0.32 -1.4 3,071,045 + -0.0 3,071,055 + -0.2
Or see this region's nucleotide sequence