Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS12140 and ABZR88_RS12145 are separated by 52 nucleotides ABZR88_RS12145 and ABZR88_RS12150 are separated by 311 nucleotides ABZR88_RS12150 and ABZR88_RS12155 overlap by 4 nucleotides
ABZR88_RS12140: ABZR88_RS12140 - FecR domain-containing protein, at 2,985,355 to 2,986,392
_RS12140
ABZR88_RS12145: ABZR88_RS12145 - RNA polymerase sigma-70 factor, at 2,986,445 to 2,987,071
_RS12145
ABZR88_RS12150: ABZR88_RS12150 - alpha-L-arabinofuranosidase C-terminal domain-containing protein, at 2,987,383 to 2,988,015
_RS12150
ABZR88_RS12155: ABZR88_RS12155 - hypothetical protein, at 2,988,012 to 2,988,722
_RS12155
Position (kb)
2986
2987
2988 Strain fitness (log2 ratio)
-1
0
1 at 2985.621 kb on + strand, within ABZR88_RS12140 at 2985.621 kb on + strand, within ABZR88_RS12140 at 2985.621 kb on + strand, within ABZR88_RS12140 at 2985.682 kb on - strand, within ABZR88_RS12140 at 2985.767 kb on - strand, within ABZR88_RS12140 at 2985.808 kb on - strand, within ABZR88_RS12140 at 2985.862 kb on - strand, within ABZR88_RS12140 at 2985.960 kb on + strand, within ABZR88_RS12140 at 2986.074 kb on + strand, within ABZR88_RS12140 at 2986.183 kb on - strand, within ABZR88_RS12140 at 2986.221 kb on + strand, within ABZR88_RS12140 at 2986.257 kb on - strand, within ABZR88_RS12140 at 2986.257 kb on - strand, within ABZR88_RS12140 at 2986.269 kb on + strand, within ABZR88_RS12140 at 2986.411 kb on + strand at 2986.412 kb on - strand at 2986.695 kb on - strand, within ABZR88_RS12145 at 2986.703 kb on + strand, within ABZR88_RS12145 at 2986.839 kb on - strand, within ABZR88_RS12145 at 2986.859 kb on - strand, within ABZR88_RS12145 at 2987.087 kb on - strand at 2987.090 kb on - strand at 2987.155 kb on - strand at 2987.410 kb on + strand at 2987.410 kb on + strand at 2987.412 kb on + strand at 2987.646 kb on + strand, within ABZR88_RS12150 at 2987.650 kb on - strand, within ABZR88_RS12150 at 2987.763 kb on - strand, within ABZR88_RS12150 at 2987.901 kb on + strand, within ABZR88_RS12150 at 2987.951 kb on + strand, within ABZR88_RS12150
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 2,985,621 + ABZR88_RS12140 0.26 -0.6 2,985,621 + ABZR88_RS12140 0.26 -0.1 2,985,621 + ABZR88_RS12140 0.26 +0.3 2,985,682 - ABZR88_RS12140 0.32 -0.6 2,985,767 - ABZR88_RS12140 0.40 -0.9 2,985,808 - ABZR88_RS12140 0.44 +0.8 2,985,862 - ABZR88_RS12140 0.49 -1.3 2,985,960 + ABZR88_RS12140 0.58 -0.3 2,986,074 + ABZR88_RS12140 0.69 +1.6 2,986,183 - ABZR88_RS12140 0.80 -0.9 2,986,221 + ABZR88_RS12140 0.83 +0.1 2,986,257 - ABZR88_RS12140 0.87 +0.6 2,986,257 - ABZR88_RS12140 0.87 -0.9 2,986,269 + ABZR88_RS12140 0.88 -0.5 2,986,411 + +1.4 2,986,412 - -0.5 2,986,695 - ABZR88_RS12145 0.40 -1.7 2,986,703 + ABZR88_RS12145 0.41 -0.8 2,986,839 - ABZR88_RS12145 0.63 -0.2 2,986,859 - ABZR88_RS12145 0.66 -1.7 2,987,087 - +0.6 2,987,090 - -0.1 2,987,155 - -0.2 2,987,410 + -0.1 2,987,410 + +0.3 2,987,412 + -0.4 2,987,646 + ABZR88_RS12150 0.42 +0.2 2,987,650 - ABZR88_RS12150 0.42 -1.5 2,987,763 - ABZR88_RS12150 0.60 +1.3 2,987,901 + ABZR88_RS12150 0.82 +0.3 2,987,951 + ABZR88_RS12150 0.90 -0.3
Or see this region's nucleotide sequence