Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12145

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS12140 and ABZR88_RS12145 are separated by 52 nucleotidesABZR88_RS12145 and ABZR88_RS12150 are separated by 311 nucleotidesABZR88_RS12150 and ABZR88_RS12155 overlap by 4 nucleotides ABZR88_RS12140: ABZR88_RS12140 - FecR domain-containing protein, at 2,985,355 to 2,986,392 _RS12140 ABZR88_RS12145: ABZR88_RS12145 - RNA polymerase sigma-70 factor, at 2,986,445 to 2,987,071 _RS12145 ABZR88_RS12150: ABZR88_RS12150 - alpha-L-arabinofuranosidase C-terminal domain-containing protein, at 2,987,383 to 2,988,015 _RS12150 ABZR88_RS12155: ABZR88_RS12155 - hypothetical protein, at 2,988,012 to 2,988,722 _RS12155 Position (kb) 2986 2987 2988Strain fitness (log2 ratio) -1 0 1at 2985.621 kb on + strand, within ABZR88_RS12140at 2985.621 kb on + strand, within ABZR88_RS12140at 2985.621 kb on + strand, within ABZR88_RS12140at 2985.682 kb on - strand, within ABZR88_RS12140at 2985.767 kb on - strand, within ABZR88_RS12140at 2985.808 kb on - strand, within ABZR88_RS12140at 2985.862 kb on - strand, within ABZR88_RS12140at 2985.960 kb on + strand, within ABZR88_RS12140at 2986.074 kb on + strand, within ABZR88_RS12140at 2986.183 kb on - strand, within ABZR88_RS12140at 2986.221 kb on + strand, within ABZR88_RS12140at 2986.257 kb on - strand, within ABZR88_RS12140at 2986.257 kb on - strand, within ABZR88_RS12140at 2986.269 kb on + strand, within ABZR88_RS12140at 2986.411 kb on + strandat 2986.412 kb on - strandat 2986.695 kb on - strand, within ABZR88_RS12145at 2986.703 kb on + strand, within ABZR88_RS12145at 2986.839 kb on - strand, within ABZR88_RS12145at 2986.859 kb on - strand, within ABZR88_RS12145at 2987.087 kb on - strandat 2987.090 kb on - strandat 2987.155 kb on - strandat 2987.410 kb on + strandat 2987.410 kb on + strandat 2987.412 kb on + strandat 2987.646 kb on + strand, within ABZR88_RS12150at 2987.650 kb on - strand, within ABZR88_RS12150at 2987.763 kb on - strand, within ABZR88_RS12150at 2987.901 kb on + strand, within ABZR88_RS12150at 2987.951 kb on + strand, within ABZR88_RS12150

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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2,985,621 + ABZR88_RS12140 0.26 -0.6
2,985,621 + ABZR88_RS12140 0.26 -0.1
2,985,621 + ABZR88_RS12140 0.26 +0.3
2,985,682 - ABZR88_RS12140 0.32 -0.6
2,985,767 - ABZR88_RS12140 0.40 -0.9
2,985,808 - ABZR88_RS12140 0.44 +0.8
2,985,862 - ABZR88_RS12140 0.49 -1.3
2,985,960 + ABZR88_RS12140 0.58 -0.3
2,986,074 + ABZR88_RS12140 0.69 +1.6
2,986,183 - ABZR88_RS12140 0.80 -0.9
2,986,221 + ABZR88_RS12140 0.83 +0.1
2,986,257 - ABZR88_RS12140 0.87 +0.6
2,986,257 - ABZR88_RS12140 0.87 -0.9
2,986,269 + ABZR88_RS12140 0.88 -0.5
2,986,411 + +1.4
2,986,412 - -0.5
2,986,695 - ABZR88_RS12145 0.40 -1.7
2,986,703 + ABZR88_RS12145 0.41 -0.8
2,986,839 - ABZR88_RS12145 0.63 -0.2
2,986,859 - ABZR88_RS12145 0.66 -1.7
2,987,087 - +0.6
2,987,090 - -0.1
2,987,155 - -0.2
2,987,410 + -0.1
2,987,410 + +0.3
2,987,412 + -0.4
2,987,646 + ABZR88_RS12150 0.42 +0.2
2,987,650 - ABZR88_RS12150 0.42 -1.5
2,987,763 - ABZR88_RS12150 0.60 +1.3
2,987,901 + ABZR88_RS12150 0.82 +0.3
2,987,951 + ABZR88_RS12150 0.90 -0.3

Or see this region's nucleotide sequence