Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12095

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS12090 and ABZR88_RS12095 are separated by 146 nucleotidesABZR88_RS12095 and ABZR88_RS12100 are separated by 97 nucleotides ABZR88_RS12090: ABZR88_RS12090 - thiamine pyrophosphate-dependent enzyme, at 2,970,413 to 2,972,845 _RS12090 ABZR88_RS12095: ABZR88_RS12095 - DUF1573 domain-containing protein, at 2,972,992 to 2,973,396 _RS12095 ABZR88_RS12100: ABZR88_RS12100 - pyridoxal phosphate-dependent aminotransferase, at 2,973,494 to 2,974,726 _RS12100 Position (kb) 2972 2973 2974Strain fitness (log2 ratio) -3 -2 -1 0 1at 2972.848 kb on - strandat 2972.965 kb on - strandat 2973.008 kb on + strandat 2973.039 kb on - strand, within ABZR88_RS12095at 2973.129 kb on + strand, within ABZR88_RS12095at 2973.350 kb on + strand, within ABZR88_RS12095at 2973.354 kb on - strand, within ABZR88_RS12095at 2973.512 kb on - strandat 2973.681 kb on - strand, within ABZR88_RS12100at 2973.728 kb on + strand, within ABZR88_RS12100at 2973.803 kb on - strand, within ABZR88_RS12100at 2973.803 kb on - strand, within ABZR88_RS12100at 2973.869 kb on + strand, within ABZR88_RS12100at 2973.994 kb on + strand, within ABZR88_RS12100at 2974.026 kb on - strand, within ABZR88_RS12100at 2974.148 kb on - strand, within ABZR88_RS12100at 2974.234 kb on + strand, within ABZR88_RS12100

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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2,972,848 - -0.0
2,972,965 - -1.0
2,973,008 + -0.4
2,973,039 - ABZR88_RS12095 0.12 -2.3
2,973,129 + ABZR88_RS12095 0.34 -2.7
2,973,350 + ABZR88_RS12095 0.88 -2.8
2,973,354 - ABZR88_RS12095 0.89 -2.2
2,973,512 - -0.2
2,973,681 - ABZR88_RS12100 0.15 +0.3
2,973,728 + ABZR88_RS12100 0.19 -0.7
2,973,803 - ABZR88_RS12100 0.25 -0.4
2,973,803 - ABZR88_RS12100 0.25 -0.2
2,973,869 + ABZR88_RS12100 0.30 -0.1
2,973,994 + ABZR88_RS12100 0.41 -0.9
2,974,026 - ABZR88_RS12100 0.43 -0.8
2,974,148 - ABZR88_RS12100 0.53 +0.1
2,974,234 + ABZR88_RS12100 0.60 -0.8

Or see this region's nucleotide sequence