Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS11950

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS11940 and ABZR88_RS11945 overlap by 4 nucleotidesABZR88_RS11945 and ABZR88_RS11950 are separated by 163 nucleotidesABZR88_RS11950 and ABZR88_RS11955 are separated by 53 nucleotidesABZR88_RS11955 and ABZR88_RS11960 are separated by 59 nucleotides ABZR88_RS11940: ABZR88_RS11940 - MotA/TolQ/ExbB proton channel family protein, at 2,941,980 to 2,942,681 _RS11940 ABZR88_RS11945: ABZR88_RS11945 - biopolymer transporter ExbD, at 2,942,678 to 2,943,076 _RS11945 ABZR88_RS11950: ABZR88_RS11950 - energy transducer TonB, at 2,943,240 to 2,944,052 _RS11950 ABZR88_RS11955: ABZR88_RS11955 - hypothetical protein, at 2,944,106 to 2,944,486 _RS11955 ABZR88_RS11960: ABZR88_RS11960 - folylpolyglutamate synthase/dihydrofolate synthase family protein, at 2,944,546 to 2,945,853 _RS11960 Position (kb) 2943 2944 2945Strain fitness (log2 ratio) -2 -1 0 1at 2942.427 kb on - strand, within ABZR88_RS11940at 2942.501 kb on + strand, within ABZR88_RS11940at 2942.502 kb on - strand, within ABZR88_RS11940at 2942.601 kb on - strand, within ABZR88_RS11940at 2942.685 kb on + strandat 2943.026 kb on - strand, within ABZR88_RS11945at 2943.026 kb on - strand, within ABZR88_RS11945at 2943.028 kb on - strand, within ABZR88_RS11945at 2943.028 kb on - strand, within ABZR88_RS11945at 2943.833 kb on - strand, within ABZR88_RS11950at 2943.860 kb on + strand, within ABZR88_RS11950at 2943.884 kb on + strand, within ABZR88_RS11950at 2943.931 kb on + strand, within ABZR88_RS11950at 2943.931 kb on + strand, within ABZR88_RS11950at 2944.137 kb on - strandat 2944.139 kb on - strandat 2944.167 kb on - strand, within ABZR88_RS11955at 2944.182 kb on - strand, within ABZR88_RS11955at 2944.182 kb on - strand, within ABZR88_RS11955at 2944.182 kb on - strand, within ABZR88_RS11955at 2944.261 kb on + strand, within ABZR88_RS11955at 2944.431 kb on - strand, within ABZR88_RS11955

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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2,942,427 - ABZR88_RS11940 0.64 -1.1
2,942,501 + ABZR88_RS11940 0.74 +0.2
2,942,502 - ABZR88_RS11940 0.74 -2.0
2,942,601 - ABZR88_RS11940 0.88 -2.1
2,942,685 + -1.2
2,943,026 - ABZR88_RS11945 0.87 -1.9
2,943,026 - ABZR88_RS11945 0.87 -1.8
2,943,028 - ABZR88_RS11945 0.88 -2.0
2,943,028 - ABZR88_RS11945 0.88 +0.2
2,943,833 - ABZR88_RS11950 0.73 -1.1
2,943,860 + ABZR88_RS11950 0.76 -1.5
2,943,884 + ABZR88_RS11950 0.79 -2.1
2,943,931 + ABZR88_RS11950 0.85 -1.5
2,943,931 + ABZR88_RS11950 0.85 -1.6
2,944,137 - -0.3
2,944,139 - -0.4
2,944,167 - ABZR88_RS11955 0.16 -0.4
2,944,182 - ABZR88_RS11955 0.20 +0.6
2,944,182 - ABZR88_RS11955 0.20 -0.1
2,944,182 - ABZR88_RS11955 0.20 +1.0
2,944,261 + ABZR88_RS11955 0.41 +0.1
2,944,431 - ABZR88_RS11955 0.85 +0.0

Or see this region's nucleotide sequence