Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS11940 and ABZR88_RS11945 overlap by 4 nucleotides ABZR88_RS11945 and ABZR88_RS11950 are separated by 163 nucleotides ABZR88_RS11950 and ABZR88_RS11955 are separated by 53 nucleotides ABZR88_RS11955 and ABZR88_RS11960 are separated by 59 nucleotides
ABZR88_RS11940: ABZR88_RS11940 - MotA/TolQ/ExbB proton channel family protein, at 2,941,980 to 2,942,681
_RS11940
ABZR88_RS11945: ABZR88_RS11945 - biopolymer transporter ExbD, at 2,942,678 to 2,943,076
_RS11945
ABZR88_RS11950: ABZR88_RS11950 - energy transducer TonB, at 2,943,240 to 2,944,052
_RS11950
ABZR88_RS11955: ABZR88_RS11955 - hypothetical protein, at 2,944,106 to 2,944,486
_RS11955
ABZR88_RS11960: ABZR88_RS11960 - folylpolyglutamate synthase/dihydrofolate synthase family protein, at 2,944,546 to 2,945,853
_RS11960
Position (kb)
2943
2944
2945 Strain fitness (log2 ratio)
-2
-1
0
1 at 2942.427 kb on - strand, within ABZR88_RS11940 at 2942.501 kb on + strand, within ABZR88_RS11940 at 2942.502 kb on - strand, within ABZR88_RS11940 at 2942.601 kb on - strand, within ABZR88_RS11940 at 2942.685 kb on + strand at 2943.026 kb on - strand, within ABZR88_RS11945 at 2943.026 kb on - strand, within ABZR88_RS11945 at 2943.028 kb on - strand, within ABZR88_RS11945 at 2943.028 kb on - strand, within ABZR88_RS11945 at 2943.833 kb on - strand, within ABZR88_RS11950 at 2943.860 kb on + strand, within ABZR88_RS11950 at 2943.884 kb on + strand, within ABZR88_RS11950 at 2943.931 kb on + strand, within ABZR88_RS11950 at 2943.931 kb on + strand, within ABZR88_RS11950 at 2944.137 kb on - strand at 2944.139 kb on - strand at 2944.167 kb on - strand, within ABZR88_RS11955 at 2944.182 kb on - strand, within ABZR88_RS11955 at 2944.182 kb on - strand, within ABZR88_RS11955 at 2944.182 kb on - strand, within ABZR88_RS11955 at 2944.261 kb on + strand, within ABZR88_RS11955 at 2944.431 kb on - strand, within ABZR88_RS11955
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 2,942,427 - ABZR88_RS11940 0.64 -1.1 2,942,501 + ABZR88_RS11940 0.74 +0.2 2,942,502 - ABZR88_RS11940 0.74 -2.0 2,942,601 - ABZR88_RS11940 0.88 -2.1 2,942,685 + -1.2 2,943,026 - ABZR88_RS11945 0.87 -1.9 2,943,026 - ABZR88_RS11945 0.87 -1.8 2,943,028 - ABZR88_RS11945 0.88 -2.0 2,943,028 - ABZR88_RS11945 0.88 +0.2 2,943,833 - ABZR88_RS11950 0.73 -1.1 2,943,860 + ABZR88_RS11950 0.76 -1.5 2,943,884 + ABZR88_RS11950 0.79 -2.1 2,943,931 + ABZR88_RS11950 0.85 -1.5 2,943,931 + ABZR88_RS11950 0.85 -1.6 2,944,137 - -0.3 2,944,139 - -0.4 2,944,167 - ABZR88_RS11955 0.16 -0.4 2,944,182 - ABZR88_RS11955 0.20 +0.6 2,944,182 - ABZR88_RS11955 0.20 -0.1 2,944,182 - ABZR88_RS11955 0.20 +1.0 2,944,261 + ABZR88_RS11955 0.41 +0.1 2,944,431 - ABZR88_RS11955 0.85 +0.0
Or see this region's nucleotide sequence