Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS11755 and ABZR88_RS11760 are separated by 426 nucleotides ABZR88_RS11760 and ABZR88_RS11765 are separated by 178 nucleotides ABZR88_RS11765 and ABZR88_RS11770 are separated by 165 nucleotides ABZR88_RS11770 and ABZR88_RS11775 are separated by 117 nucleotides
ABZR88_RS11755: ABZR88_RS11755 - aspartate kinase, at 2,892,254 to 2,893,510
_RS11755
ABZR88_RS11760: ABZR88_RS11760 - phosphatidylinositol-specific phospholipase C/glycerophosphodiester phosphodiesterase family protein, at 2,893,937 to 2,894,770
_RS11760
ABZR88_RS11765: ABZR88_RS11765 - hypothetical protein, at 2,894,949 to 2,895,077
_RS11765
ABZR88_RS11770: ABZR88_RS11770 - tRNA-Arg, at 2,895,243 to 2,895,314
_RS11770
ABZR88_RS11775: ABZR88_RS11775 - acyl-CoA desaturase, at 2,895,432 to 2,896,160
_RS11775
Position (kb)
2893
2894
2895 Strain fitness (log2 ratio)
-2
-1
0
1 at 2893.014 kb on - strand, within ABZR88_RS11755 at 2893.280 kb on - strand, within ABZR88_RS11755 at 2893.351 kb on - strand, within ABZR88_RS11755 at 2893.360 kb on - strand, within ABZR88_RS11755 at 2893.484 kb on - strand at 2893.508 kb on + strand at 2893.508 kb on + strand at 2893.540 kb on + strand at 2893.660 kb on + strand at 2893.660 kb on + strand at 2894.216 kb on - strand, within ABZR88_RS11760 at 2894.481 kb on + strand, within ABZR88_RS11760 at 2894.482 kb on - strand, within ABZR88_RS11760 at 2894.684 kb on - strand, within ABZR88_RS11760 at 2894.787 kb on + strand at 2894.802 kb on - strand at 2894.807 kb on - strand at 2894.893 kb on - strand at 2894.917 kb on + strand at 2895.113 kb on + strand at 2895.194 kb on + strand at 2895.419 kb on - strand at 2895.505 kb on - strand, within ABZR88_RS11775
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 2,893,014 - ABZR88_RS11755 0.60 +1.4 2,893,280 - ABZR88_RS11755 0.82 -0.0 2,893,351 - ABZR88_RS11755 0.87 -1.1 2,893,360 - ABZR88_RS11755 0.88 +0.1 2,893,484 - -0.4 2,893,508 + +0.3 2,893,508 + +0.6 2,893,540 + +1.1 2,893,660 + -0.2 2,893,660 + +1.7 2,894,216 - ABZR88_RS11760 0.33 -2.1 2,894,481 + ABZR88_RS11760 0.65 -0.6 2,894,482 - ABZR88_RS11760 0.65 -1.7 2,894,684 - ABZR88_RS11760 0.90 -0.6 2,894,787 + -0.2 2,894,802 - -1.6 2,894,807 - -0.2 2,894,893 - -0.8 2,894,917 + -0.6 2,895,113 + +0.0 2,895,194 + +0.3 2,895,419 - -0.1 2,895,505 - ABZR88_RS11775 0.10 -0.4
Or see this region's nucleotide sequence