Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS11615

Experiment: R2A motility; outer cut

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS11610 and ABZR88_RS11615 are separated by 2 nucleotidesABZR88_RS11615 and ABZR88_RS11620 are separated by 3 nucleotides ABZR88_RS11610: ABZR88_RS11610 - 2-isopropylmalate synthase, at 2,857,338 to 2,858,498 _RS11610 ABZR88_RS11615: ABZR88_RS11615 - threonine ammonia-lyase IlvA, at 2,858,501 to 2,859,754 _RS11615 ABZR88_RS11620: ABZR88_RS11620 - acyltransferase, at 2,859,758 to 2,860,900 _RS11620 Position (kb) 2858 2859 2860Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2857.664 kb on + strand, within ABZR88_RS11610at 2858.198 kb on + strand, within ABZR88_RS11610at 2858.279 kb on + strand, within ABZR88_RS11610at 2858.409 kb on + strandat 2858.653 kb on - strand, within ABZR88_RS11615at 2858.880 kb on + strand, within ABZR88_RS11615at 2859.044 kb on - strand, within ABZR88_RS11615at 2859.323 kb on + strand, within ABZR88_RS11615at 2859.346 kb on - strand, within ABZR88_RS11615at 2859.418 kb on - strand, within ABZR88_RS11615at 2859.552 kb on + strand, within ABZR88_RS11615at 2859.581 kb on - strand, within ABZR88_RS11615at 2859.828 kb on + strandat 2859.831 kb on + strandat 2859.864 kb on + strandat 2859.980 kb on - strand, within ABZR88_RS11620at 2860.072 kb on + strand, within ABZR88_RS11620at 2860.257 kb on - strand, within ABZR88_RS11620at 2860.358 kb on - strand, within ABZR88_RS11620at 2860.436 kb on - strand, within ABZR88_RS11620at 2860.451 kb on - strand, within ABZR88_RS11620at 2860.507 kb on + strand, within ABZR88_RS11620at 2860.598 kb on - strand, within ABZR88_RS11620at 2860.631 kb on + strand, within ABZR88_RS11620

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
remove
2,857,664 + ABZR88_RS11610 0.28 -1.1
2,858,198 + ABZR88_RS11610 0.74 -0.4
2,858,279 + ABZR88_RS11610 0.81 +0.2
2,858,409 + -0.8
2,858,653 - ABZR88_RS11615 0.12 -0.4
2,858,880 + ABZR88_RS11615 0.30 -2.0
2,859,044 - ABZR88_RS11615 0.43 -0.3
2,859,323 + ABZR88_RS11615 0.66 +0.2
2,859,346 - ABZR88_RS11615 0.67 +0.3
2,859,418 - ABZR88_RS11615 0.73 -0.4
2,859,552 + ABZR88_RS11615 0.84 +0.0
2,859,581 - ABZR88_RS11615 0.86 -1.3
2,859,828 + -0.6
2,859,831 + -0.7
2,859,864 + -0.4
2,859,980 - ABZR88_RS11620 0.19 +0.0
2,860,072 + ABZR88_RS11620 0.27 -0.3
2,860,257 - ABZR88_RS11620 0.44 +0.0
2,860,358 - ABZR88_RS11620 0.52 -0.8
2,860,436 - ABZR88_RS11620 0.59 -0.3
2,860,451 - ABZR88_RS11620 0.61 +2.8
2,860,507 + ABZR88_RS11620 0.66 +0.0
2,860,598 - ABZR88_RS11620 0.73 +0.1
2,860,631 + ABZR88_RS11620 0.76 -0.1

Or see this region's nucleotide sequence