Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS11580

Experiment: R2A motility; outer cut

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS11575 and ABZR88_RS11580 are separated by 64 nucleotidesABZR88_RS11580 and ABZR88_RS11585 are separated by 50 nucleotidesABZR88_RS11585 and ABZR88_RS11590 are separated by 103 nucleotides ABZR88_RS11575: ABZR88_RS11575 - dihydroxy-acid dehydratase, at 2,848,362 to 2,850,068 _RS11575 ABZR88_RS11580: ABZR88_RS11580 - biosynthetic-type acetolactate synthase large subunit, at 2,850,133 to 2,851,875 _RS11580 ABZR88_RS11585: ABZR88_RS11585 - acetolactate synthase small subunit, at 2,851,926 to 2,852,528 _RS11585 ABZR88_RS11590: ABZR88_RS11590 - ketol-acid reductoisomerase, at 2,852,632 to 2,853,690 _RS11590 Position (kb) 2850 2851 2852Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2849.326 kb on - strand, within ABZR88_RS11575at 2849.927 kb on - strandat 2850.053 kb on - strandat 2850.296 kb on - strandat 2850.375 kb on + strand, within ABZR88_RS11580at 2850.481 kb on - strand, within ABZR88_RS11580at 2850.712 kb on - strand, within ABZR88_RS11580at 2850.712 kb on - strand, within ABZR88_RS11580at 2850.767 kb on - strand, within ABZR88_RS11580at 2850.767 kb on - strand, within ABZR88_RS11580at 2850.768 kb on + strand, within ABZR88_RS11580at 2850.909 kb on - strand, within ABZR88_RS11580at 2850.947 kb on + strand, within ABZR88_RS11580at 2850.987 kb on - strand, within ABZR88_RS11580at 2851.096 kb on - strand, within ABZR88_RS11580at 2851.203 kb on + strand, within ABZR88_RS11580at 2851.234 kb on - strand, within ABZR88_RS11580at 2851.344 kb on + strand, within ABZR88_RS11580at 2851.361 kb on + strand, within ABZR88_RS11580at 2851.823 kb on + strandat 2852.048 kb on + strand, within ABZR88_RS11585at 2852.165 kb on - strand, within ABZR88_RS11585at 2852.170 kb on - strand, within ABZR88_RS11585at 2852.170 kb on - strand, within ABZR88_RS11585at 2852.174 kb on + strand, within ABZR88_RS11585at 2852.260 kb on + strand, within ABZR88_RS11585at 2852.814 kb on + strand, within ABZR88_RS11590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
remove
2,849,326 - ABZR88_RS11575 0.56 -1.4
2,849,927 - -2.5
2,850,053 - -0.1
2,850,296 - -1.6
2,850,375 + ABZR88_RS11580 0.14 +0.2
2,850,481 - ABZR88_RS11580 0.20 -1.1
2,850,712 - ABZR88_RS11580 0.33 -0.8
2,850,712 - ABZR88_RS11580 0.33 -0.4
2,850,767 - ABZR88_RS11580 0.36 -1.4
2,850,767 - ABZR88_RS11580 0.36 -0.4
2,850,768 + ABZR88_RS11580 0.36 +1.2
2,850,909 - ABZR88_RS11580 0.45 -1.8
2,850,947 + ABZR88_RS11580 0.47 -2.6
2,850,987 - ABZR88_RS11580 0.49 +0.2
2,851,096 - ABZR88_RS11580 0.55 +1.2
2,851,203 + ABZR88_RS11580 0.61 -1.7
2,851,234 - ABZR88_RS11580 0.63 +0.4
2,851,344 + ABZR88_RS11580 0.69 -1.6
2,851,361 + ABZR88_RS11580 0.70 +0.0
2,851,823 + -1.4
2,852,048 + ABZR88_RS11585 0.20 -1.1
2,852,165 - ABZR88_RS11585 0.40 +0.2
2,852,170 - ABZR88_RS11585 0.40 -1.8
2,852,170 - ABZR88_RS11585 0.40 -1.0
2,852,174 + ABZR88_RS11585 0.41 -0.3
2,852,260 + ABZR88_RS11585 0.55 +3.2
2,852,814 + ABZR88_RS11590 0.17 -1.6

Or see this region's nucleotide sequence