Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS11575 and ABZR88_RS11580 are separated by 64 nucleotides ABZR88_RS11580 and ABZR88_RS11585 are separated by 50 nucleotides ABZR88_RS11585 and ABZR88_RS11590 are separated by 103 nucleotides
ABZR88_RS11575: ABZR88_RS11575 - dihydroxy-acid dehydratase, at 2,848,362 to 2,850,068
_RS11575
ABZR88_RS11580: ABZR88_RS11580 - biosynthetic-type acetolactate synthase large subunit, at 2,850,133 to 2,851,875
_RS11580
ABZR88_RS11585: ABZR88_RS11585 - acetolactate synthase small subunit, at 2,851,926 to 2,852,528
_RS11585
ABZR88_RS11590: ABZR88_RS11590 - ketol-acid reductoisomerase, at 2,852,632 to 2,853,690
_RS11590
Position (kb)
2850
2851
2852 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2849.326 kb on - strand, within ABZR88_RS11575 at 2849.927 kb on - strand at 2850.053 kb on - strand at 2850.296 kb on - strand at 2850.375 kb on + strand, within ABZR88_RS11580 at 2850.481 kb on - strand, within ABZR88_RS11580 at 2850.712 kb on - strand, within ABZR88_RS11580 at 2850.712 kb on - strand, within ABZR88_RS11580 at 2850.767 kb on - strand, within ABZR88_RS11580 at 2850.767 kb on - strand, within ABZR88_RS11580 at 2850.768 kb on + strand, within ABZR88_RS11580 at 2850.909 kb on - strand, within ABZR88_RS11580 at 2850.947 kb on + strand, within ABZR88_RS11580 at 2850.987 kb on - strand, within ABZR88_RS11580 at 2851.096 kb on - strand, within ABZR88_RS11580 at 2851.203 kb on + strand, within ABZR88_RS11580 at 2851.234 kb on - strand, within ABZR88_RS11580 at 2851.344 kb on + strand, within ABZR88_RS11580 at 2851.361 kb on + strand, within ABZR88_RS11580 at 2851.823 kb on + strand at 2852.048 kb on + strand, within ABZR88_RS11585 at 2852.165 kb on - strand, within ABZR88_RS11585 at 2852.170 kb on - strand, within ABZR88_RS11585 at 2852.170 kb on - strand, within ABZR88_RS11585 at 2852.174 kb on + strand, within ABZR88_RS11585 at 2852.260 kb on + strand, within ABZR88_RS11585 at 2852.814 kb on + strand, within ABZR88_RS11590
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 2,849,326 - ABZR88_RS11575 0.56 -1.4 2,849,927 - -2.5 2,850,053 - -0.1 2,850,296 - -1.6 2,850,375 + ABZR88_RS11580 0.14 +0.2 2,850,481 - ABZR88_RS11580 0.20 -1.1 2,850,712 - ABZR88_RS11580 0.33 -0.8 2,850,712 - ABZR88_RS11580 0.33 -0.4 2,850,767 - ABZR88_RS11580 0.36 -1.4 2,850,767 - ABZR88_RS11580 0.36 -0.4 2,850,768 + ABZR88_RS11580 0.36 +1.2 2,850,909 - ABZR88_RS11580 0.45 -1.8 2,850,947 + ABZR88_RS11580 0.47 -2.6 2,850,987 - ABZR88_RS11580 0.49 +0.2 2,851,096 - ABZR88_RS11580 0.55 +1.2 2,851,203 + ABZR88_RS11580 0.61 -1.7 2,851,234 - ABZR88_RS11580 0.63 +0.4 2,851,344 + ABZR88_RS11580 0.69 -1.6 2,851,361 + ABZR88_RS11580 0.70 +0.0 2,851,823 + -1.4 2,852,048 + ABZR88_RS11585 0.20 -1.1 2,852,165 - ABZR88_RS11585 0.40 +0.2 2,852,170 - ABZR88_RS11585 0.40 -1.8 2,852,170 - ABZR88_RS11585 0.40 -1.0 2,852,174 + ABZR88_RS11585 0.41 -0.3 2,852,260 + ABZR88_RS11585 0.55 +3.2 2,852,814 + ABZR88_RS11590 0.17 -1.6
Or see this region's nucleotide sequence