Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS11470

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS11465 and ABZR88_RS11470 are separated by 557 nucleotidesABZR88_RS11470 and ABZR88_RS11475 are separated by 109 nucleotidesABZR88_RS11475 and ABZR88_RS11480 are separated by 111 nucleotides ABZR88_RS11465: ABZR88_RS11465 - ammonium transporter, at 2,819,783 to 2,821,357 _RS11465 ABZR88_RS11470: ABZR88_RS11470 - glutamine synthetase III, at 2,821,915 to 2,824,086 _RS11470 ABZR88_RS11475: ABZR88_RS11475 - DinB family protein, at 2,824,196 to 2,824,702 _RS11475 ABZR88_RS11480: ABZR88_RS11480 - L,D-transpeptidase family protein, at 2,824,814 to 2,826,409 _RS11480 Position (kb) 2821 2822 2823 2824 2825Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2820.962 kb on - strand, within ABZR88_RS11465at 2820.993 kb on - strand, within ABZR88_RS11465at 2821.126 kb on + strand, within ABZR88_RS11465at 2821.501 kb on - strandat 2822.074 kb on - strandat 2822.083 kb on - strandat 2822.133 kb on + strand, within ABZR88_RS11470at 2822.173 kb on + strand, within ABZR88_RS11470at 2822.332 kb on - strand, within ABZR88_RS11470at 2822.403 kb on + strand, within ABZR88_RS11470at 2822.574 kb on - strand, within ABZR88_RS11470at 2822.588 kb on - strand, within ABZR88_RS11470at 2822.589 kb on + strand, within ABZR88_RS11470at 2822.590 kb on - strand, within ABZR88_RS11470at 2822.609 kb on - strand, within ABZR88_RS11470at 2822.706 kb on + strand, within ABZR88_RS11470at 2822.950 kb on - strand, within ABZR88_RS11470at 2823.050 kb on - strand, within ABZR88_RS11470at 2823.219 kb on + strand, within ABZR88_RS11470at 2823.285 kb on + strand, within ABZR88_RS11470at 2823.400 kb on - strand, within ABZR88_RS11470at 2823.770 kb on - strand, within ABZR88_RS11470at 2823.811 kb on - strand, within ABZR88_RS11470at 2823.813 kb on - strand, within ABZR88_RS11470at 2823.813 kb on - strand, within ABZR88_RS11470at 2823.908 kb on + strandat 2823.957 kb on + strandat 2824.080 kb on + strandat 2824.362 kb on - strand, within ABZR88_RS11475at 2824.440 kb on + strand, within ABZR88_RS11475at 2824.441 kb on - strand, within ABZR88_RS11475at 2824.441 kb on - strand, within ABZR88_RS11475at 2824.641 kb on - strand, within ABZR88_RS11475at 2824.871 kb on - strandat 2824.895 kb on - strandat 2824.937 kb on - strandat 2824.952 kb on - strandat 2825.009 kb on - strand, within ABZR88_RS11480at 2825.058 kb on + strand, within ABZR88_RS11480

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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2,820,962 - ABZR88_RS11465 0.75 -0.3
2,820,993 - ABZR88_RS11465 0.77 +0.2
2,821,126 + ABZR88_RS11465 0.85 -0.6
2,821,501 - +1.3
2,822,074 - -3.2
2,822,083 - -2.9
2,822,133 + ABZR88_RS11470 0.10 -3.1
2,822,173 + ABZR88_RS11470 0.12 -2.4
2,822,332 - ABZR88_RS11470 0.19 -2.5
2,822,403 + ABZR88_RS11470 0.22 -2.5
2,822,574 - ABZR88_RS11470 0.30 -3.1
2,822,588 - ABZR88_RS11470 0.31 -1.6
2,822,589 + ABZR88_RS11470 0.31 -2.8
2,822,590 - ABZR88_RS11470 0.31 -3.4
2,822,609 - ABZR88_RS11470 0.32 -2.1
2,822,706 + ABZR88_RS11470 0.36 -0.4
2,822,950 - ABZR88_RS11470 0.48 -1.9
2,823,050 - ABZR88_RS11470 0.52 -3.0
2,823,219 + ABZR88_RS11470 0.60 -1.2
2,823,285 + ABZR88_RS11470 0.63 -2.6
2,823,400 - ABZR88_RS11470 0.68 -2.9
2,823,770 - ABZR88_RS11470 0.85 -2.8
2,823,811 - ABZR88_RS11470 0.87 -2.6
2,823,813 - ABZR88_RS11470 0.87 -3.2
2,823,813 - ABZR88_RS11470 0.87 -2.3
2,823,908 + +0.2
2,823,957 + -2.5
2,824,080 + -2.8
2,824,362 - ABZR88_RS11475 0.33 +0.0
2,824,440 + ABZR88_RS11475 0.48 -0.2
2,824,441 - ABZR88_RS11475 0.48 +0.1
2,824,441 - ABZR88_RS11475 0.48 -0.0
2,824,641 - ABZR88_RS11475 0.88 -1.9
2,824,871 - +2.2
2,824,895 - -0.4
2,824,937 - +0.0
2,824,952 - -0.2
2,825,009 - ABZR88_RS11480 0.12 -0.1
2,825,058 + ABZR88_RS11480 0.15 -0.3

Or see this region's nucleotide sequence