Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS11465 and ABZR88_RS11470 are separated by 557 nucleotides ABZR88_RS11470 and ABZR88_RS11475 are separated by 109 nucleotides ABZR88_RS11475 and ABZR88_RS11480 are separated by 111 nucleotides
ABZR88_RS11465: ABZR88_RS11465 - ammonium transporter, at 2,819,783 to 2,821,357
_RS11465
ABZR88_RS11470: ABZR88_RS11470 - glutamine synthetase III, at 2,821,915 to 2,824,086
_RS11470
ABZR88_RS11475: ABZR88_RS11475 - DinB family protein, at 2,824,196 to 2,824,702
_RS11475
ABZR88_RS11480: ABZR88_RS11480 - L,D-transpeptidase family protein, at 2,824,814 to 2,826,409
_RS11480
Position (kb)
2821
2822
2823
2824
2825 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2820.962 kb on - strand, within ABZR88_RS11465 at 2820.993 kb on - strand, within ABZR88_RS11465 at 2821.126 kb on + strand, within ABZR88_RS11465 at 2821.501 kb on - strand at 2822.074 kb on - strand at 2822.083 kb on - strand at 2822.133 kb on + strand, within ABZR88_RS11470 at 2822.173 kb on + strand, within ABZR88_RS11470 at 2822.332 kb on - strand, within ABZR88_RS11470 at 2822.403 kb on + strand, within ABZR88_RS11470 at 2822.574 kb on - strand, within ABZR88_RS11470 at 2822.588 kb on - strand, within ABZR88_RS11470 at 2822.589 kb on + strand, within ABZR88_RS11470 at 2822.590 kb on - strand, within ABZR88_RS11470 at 2822.609 kb on - strand, within ABZR88_RS11470 at 2822.706 kb on + strand, within ABZR88_RS11470 at 2822.950 kb on - strand, within ABZR88_RS11470 at 2823.050 kb on - strand, within ABZR88_RS11470 at 2823.219 kb on + strand, within ABZR88_RS11470 at 2823.285 kb on + strand, within ABZR88_RS11470 at 2823.400 kb on - strand, within ABZR88_RS11470 at 2823.770 kb on - strand, within ABZR88_RS11470 at 2823.811 kb on - strand, within ABZR88_RS11470 at 2823.813 kb on - strand, within ABZR88_RS11470 at 2823.813 kb on - strand, within ABZR88_RS11470 at 2823.908 kb on + strand at 2823.957 kb on + strand at 2824.080 kb on + strand at 2824.362 kb on - strand, within ABZR88_RS11475 at 2824.440 kb on + strand, within ABZR88_RS11475 at 2824.441 kb on - strand, within ABZR88_RS11475 at 2824.441 kb on - strand, within ABZR88_RS11475 at 2824.641 kb on - strand, within ABZR88_RS11475 at 2824.871 kb on - strand at 2824.895 kb on - strand at 2824.937 kb on - strand at 2824.952 kb on - strand at 2825.009 kb on - strand, within ABZR88_RS11480 at 2825.058 kb on + strand, within ABZR88_RS11480
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 2,820,962 - ABZR88_RS11465 0.75 -0.3 2,820,993 - ABZR88_RS11465 0.77 +0.2 2,821,126 + ABZR88_RS11465 0.85 -0.6 2,821,501 - +1.3 2,822,074 - -3.2 2,822,083 - -2.9 2,822,133 + ABZR88_RS11470 0.10 -3.1 2,822,173 + ABZR88_RS11470 0.12 -2.4 2,822,332 - ABZR88_RS11470 0.19 -2.5 2,822,403 + ABZR88_RS11470 0.22 -2.5 2,822,574 - ABZR88_RS11470 0.30 -3.1 2,822,588 - ABZR88_RS11470 0.31 -1.6 2,822,589 + ABZR88_RS11470 0.31 -2.8 2,822,590 - ABZR88_RS11470 0.31 -3.4 2,822,609 - ABZR88_RS11470 0.32 -2.1 2,822,706 + ABZR88_RS11470 0.36 -0.4 2,822,950 - ABZR88_RS11470 0.48 -1.9 2,823,050 - ABZR88_RS11470 0.52 -3.0 2,823,219 + ABZR88_RS11470 0.60 -1.2 2,823,285 + ABZR88_RS11470 0.63 -2.6 2,823,400 - ABZR88_RS11470 0.68 -2.9 2,823,770 - ABZR88_RS11470 0.85 -2.8 2,823,811 - ABZR88_RS11470 0.87 -2.6 2,823,813 - ABZR88_RS11470 0.87 -3.2 2,823,813 - ABZR88_RS11470 0.87 -2.3 2,823,908 + +0.2 2,823,957 + -2.5 2,824,080 + -2.8 2,824,362 - ABZR88_RS11475 0.33 +0.0 2,824,440 + ABZR88_RS11475 0.48 -0.2 2,824,441 - ABZR88_RS11475 0.48 +0.1 2,824,441 - ABZR88_RS11475 0.48 -0.0 2,824,641 - ABZR88_RS11475 0.88 -1.9 2,824,871 - +2.2 2,824,895 - -0.4 2,824,937 - +0.0 2,824,952 - -0.2 2,825,009 - ABZR88_RS11480 0.12 -0.1 2,825,058 + ABZR88_RS11480 0.15 -0.3
Or see this region's nucleotide sequence