Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS10560

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS10555 and ABZR88_RS10560 are separated by 617 nucleotidesABZR88_RS10560 and ABZR88_RS10565 are separated by 129 nucleotidesABZR88_RS10565 and ABZR88_RS10570 are separated by 15 nucleotides ABZR88_RS10555: ABZR88_RS10555 - hypothetical protein, at 2,590,085 to 2,590,300 _RS10555 ABZR88_RS10560: ABZR88_RS10560 - multidrug effflux MFS transporter, at 2,590,918 to 2,592,141 _RS10560 ABZR88_RS10565: ABZR88_RS10565 - thioredoxin family protein, at 2,592,271 to 2,592,885 _RS10565 ABZR88_RS10570: ABZR88_RS10570 - TlpA disulfide reductase family protein, at 2,592,901 to 2,593,371 _RS10570 Position (kb) 2590 2591 2592 2593Strain fitness (log2 ratio) -2 -1 0 1 2at 2589.949 kb on + strandat 2589.949 kb on + strandat 2589.961 kb on - strandat 2589.974 kb on - strandat 2590.021 kb on + strandat 2590.069 kb on + strandat 2590.123 kb on + strand, within ABZR88_RS10555at 2590.123 kb on + strand, within ABZR88_RS10555at 2590.124 kb on - strand, within ABZR88_RS10555at 2590.267 kb on - strand, within ABZR88_RS10555at 2590.396 kb on - strandat 2590.396 kb on - strandat 2590.403 kb on - strandat 2590.406 kb on - strandat 2590.552 kb on - strandat 2590.585 kb on - strandat 2590.611 kb on + strandat 2590.623 kb on + strandat 2590.733 kb on + strandat 2590.745 kb on + strandat 2590.763 kb on + strandat 2590.876 kb on - strandat 2590.973 kb on + strandat 2590.992 kb on + strandat 2590.992 kb on + strandat 2590.993 kb on - strandat 2590.996 kb on + strandat 2590.997 kb on - strandat 2591.364 kb on + strand, within ABZR88_RS10560at 2591.439 kb on - strand, within ABZR88_RS10560at 2591.442 kb on - strand, within ABZR88_RS10560at 2591.442 kb on - strand, within ABZR88_RS10560at 2591.495 kb on + strand, within ABZR88_RS10560at 2591.606 kb on - strand, within ABZR88_RS10560at 2591.838 kb on - strand, within ABZR88_RS10560at 2591.892 kb on + strand, within ABZR88_RS10560at 2591.893 kb on - strand, within ABZR88_RS10560at 2591.935 kb on - strand, within ABZR88_RS10560at 2591.960 kb on + strand, within ABZR88_RS10560at 2592.018 kb on + strand, within ABZR88_RS10560at 2592.078 kb on + strandat 2592.085 kb on - strandat 2592.085 kb on - strandat 2592.107 kb on + strandat 2592.131 kb on + strandat 2592.207 kb on - strandat 2592.221 kb on + strandat 2592.423 kb on + strand, within ABZR88_RS10565at 2592.424 kb on - strand, within ABZR88_RS10565at 2592.424 kb on - strand, within ABZR88_RS10565at 2592.424 kb on - strand, within ABZR88_RS10565at 2592.426 kb on - strand, within ABZR88_RS10565at 2592.426 kb on - strand, within ABZR88_RS10565at 2592.538 kb on - strand, within ABZR88_RS10565at 2592.666 kb on + strand, within ABZR88_RS10565at 2592.667 kb on - strand, within ABZR88_RS10565at 2592.678 kb on - strand, within ABZR88_RS10565at 2592.832 kb on - strandat 2592.920 kb on - strandat 2592.924 kb on + strandat 2592.925 kb on - strandat 2592.939 kb on - strandat 2592.969 kb on + strand, within ABZR88_RS10570at 2593.036 kb on + strand, within ABZR88_RS10570at 2593.037 kb on - strand, within ABZR88_RS10570

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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2,589,949 + +1.1
2,589,949 + +0.0
2,589,961 - -1.0
2,589,974 - +0.1
2,590,021 + +0.7
2,590,069 + +0.7
2,590,123 + ABZR88_RS10555 0.18 +0.4
2,590,123 + ABZR88_RS10555 0.18 +1.8
2,590,124 - ABZR88_RS10555 0.18 +0.4
2,590,267 - ABZR88_RS10555 0.84 +1.0
2,590,396 - -0.9
2,590,396 - -0.6
2,590,403 - -0.7
2,590,406 - -0.4
2,590,552 - -0.6
2,590,585 - -1.4
2,590,611 + -1.1
2,590,623 + -0.4
2,590,733 + +0.1
2,590,745 + -0.7
2,590,763 + -1.5
2,590,876 - +0.1
2,590,973 + -0.4
2,590,992 + -0.3
2,590,992 + -0.9
2,590,993 - -1.3
2,590,996 + -0.9
2,590,997 - -2.6
2,591,364 + ABZR88_RS10560 0.36 -0.1
2,591,439 - ABZR88_RS10560 0.43 +1.1
2,591,442 - ABZR88_RS10560 0.43 -1.6
2,591,442 - ABZR88_RS10560 0.43 -1.7
2,591,495 + ABZR88_RS10560 0.47 -0.6
2,591,606 - ABZR88_RS10560 0.56 +0.6
2,591,838 - ABZR88_RS10560 0.75 -1.5
2,591,892 + ABZR88_RS10560 0.80 -0.7
2,591,893 - ABZR88_RS10560 0.80 +0.0
2,591,935 - ABZR88_RS10560 0.83 -0.3
2,591,960 + ABZR88_RS10560 0.85 -1.9
2,592,018 + ABZR88_RS10560 0.90 -0.4
2,592,078 + -0.7
2,592,085 - -1.0
2,592,085 - -1.9
2,592,107 + -0.1
2,592,131 + +0.1
2,592,207 - -0.4
2,592,221 + +0.6
2,592,423 + ABZR88_RS10565 0.25 +0.8
2,592,424 - ABZR88_RS10565 0.25 -0.1
2,592,424 - ABZR88_RS10565 0.25 +0.1
2,592,424 - ABZR88_RS10565 0.25 +0.1
2,592,426 - ABZR88_RS10565 0.25 +0.5
2,592,426 - ABZR88_RS10565 0.25 +0.3
2,592,538 - ABZR88_RS10565 0.43 +0.8
2,592,666 + ABZR88_RS10565 0.64 +0.2
2,592,667 - ABZR88_RS10565 0.64 +0.2
2,592,678 - ABZR88_RS10565 0.66 -0.9
2,592,832 - +0.1
2,592,920 - -0.4
2,592,924 + +0.4
2,592,925 - +0.3
2,592,939 - +0.8
2,592,969 + ABZR88_RS10570 0.14 +0.6
2,593,036 + ABZR88_RS10570 0.29 -0.7
2,593,037 - ABZR88_RS10570 0.29 +0.2

Or see this region's nucleotide sequence