Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS10555 and ABZR88_RS10560 are separated by 617 nucleotides ABZR88_RS10560 and ABZR88_RS10565 are separated by 129 nucleotides ABZR88_RS10565 and ABZR88_RS10570 are separated by 15 nucleotides
ABZR88_RS10555: ABZR88_RS10555 - hypothetical protein, at 2,590,085 to 2,590,300
_RS10555
ABZR88_RS10560: ABZR88_RS10560 - multidrug effflux MFS transporter, at 2,590,918 to 2,592,141
_RS10560
ABZR88_RS10565: ABZR88_RS10565 - thioredoxin family protein, at 2,592,271 to 2,592,885
_RS10565
ABZR88_RS10570: ABZR88_RS10570 - TlpA disulfide reductase family protein, at 2,592,901 to 2,593,371
_RS10570
Position (kb)
2590
2591
2592
2593 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2589.949 kb on + strand at 2589.949 kb on + strand at 2589.961 kb on - strand at 2589.974 kb on - strand at 2590.021 kb on + strand at 2590.069 kb on + strand at 2590.123 kb on + strand, within ABZR88_RS10555 at 2590.123 kb on + strand, within ABZR88_RS10555 at 2590.124 kb on - strand, within ABZR88_RS10555 at 2590.267 kb on - strand, within ABZR88_RS10555 at 2590.396 kb on - strand at 2590.396 kb on - strand at 2590.403 kb on - strand at 2590.406 kb on - strand at 2590.552 kb on - strand at 2590.585 kb on - strand at 2590.611 kb on + strand at 2590.623 kb on + strand at 2590.733 kb on + strand at 2590.745 kb on + strand at 2590.763 kb on + strand at 2590.876 kb on - strand at 2590.973 kb on + strand at 2590.992 kb on + strand at 2590.992 kb on + strand at 2590.993 kb on - strand at 2590.996 kb on + strand at 2590.997 kb on - strand at 2591.364 kb on + strand, within ABZR88_RS10560 at 2591.439 kb on - strand, within ABZR88_RS10560 at 2591.442 kb on - strand, within ABZR88_RS10560 at 2591.442 kb on - strand, within ABZR88_RS10560 at 2591.495 kb on + strand, within ABZR88_RS10560 at 2591.606 kb on - strand, within ABZR88_RS10560 at 2591.838 kb on - strand, within ABZR88_RS10560 at 2591.892 kb on + strand, within ABZR88_RS10560 at 2591.893 kb on - strand, within ABZR88_RS10560 at 2591.935 kb on - strand, within ABZR88_RS10560 at 2591.960 kb on + strand, within ABZR88_RS10560 at 2592.018 kb on + strand, within ABZR88_RS10560 at 2592.078 kb on + strand at 2592.085 kb on - strand at 2592.085 kb on - strand at 2592.107 kb on + strand at 2592.131 kb on + strand at 2592.207 kb on - strand at 2592.221 kb on + strand at 2592.423 kb on + strand, within ABZR88_RS10565 at 2592.424 kb on - strand, within ABZR88_RS10565 at 2592.424 kb on - strand, within ABZR88_RS10565 at 2592.424 kb on - strand, within ABZR88_RS10565 at 2592.426 kb on - strand, within ABZR88_RS10565 at 2592.426 kb on - strand, within ABZR88_RS10565 at 2592.538 kb on - strand, within ABZR88_RS10565 at 2592.666 kb on + strand, within ABZR88_RS10565 at 2592.667 kb on - strand, within ABZR88_RS10565 at 2592.678 kb on - strand, within ABZR88_RS10565 at 2592.832 kb on - strand at 2592.920 kb on - strand at 2592.924 kb on + strand at 2592.925 kb on - strand at 2592.939 kb on - strand at 2592.969 kb on + strand, within ABZR88_RS10570 at 2593.036 kb on + strand, within ABZR88_RS10570 at 2593.037 kb on - strand, within ABZR88_RS10570
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 2,589,949 + +1.1 2,589,949 + +0.0 2,589,961 - -1.0 2,589,974 - +0.1 2,590,021 + +0.7 2,590,069 + +0.7 2,590,123 + ABZR88_RS10555 0.18 +0.4 2,590,123 + ABZR88_RS10555 0.18 +1.8 2,590,124 - ABZR88_RS10555 0.18 +0.4 2,590,267 - ABZR88_RS10555 0.84 +1.0 2,590,396 - -0.9 2,590,396 - -0.6 2,590,403 - -0.7 2,590,406 - -0.4 2,590,552 - -0.6 2,590,585 - -1.4 2,590,611 + -1.1 2,590,623 + -0.4 2,590,733 + +0.1 2,590,745 + -0.7 2,590,763 + -1.5 2,590,876 - +0.1 2,590,973 + -0.4 2,590,992 + -0.3 2,590,992 + -0.9 2,590,993 - -1.3 2,590,996 + -0.9 2,590,997 - -2.6 2,591,364 + ABZR88_RS10560 0.36 -0.1 2,591,439 - ABZR88_RS10560 0.43 +1.1 2,591,442 - ABZR88_RS10560 0.43 -1.6 2,591,442 - ABZR88_RS10560 0.43 -1.7 2,591,495 + ABZR88_RS10560 0.47 -0.6 2,591,606 - ABZR88_RS10560 0.56 +0.6 2,591,838 - ABZR88_RS10560 0.75 -1.5 2,591,892 + ABZR88_RS10560 0.80 -0.7 2,591,893 - ABZR88_RS10560 0.80 +0.0 2,591,935 - ABZR88_RS10560 0.83 -0.3 2,591,960 + ABZR88_RS10560 0.85 -1.9 2,592,018 + ABZR88_RS10560 0.90 -0.4 2,592,078 + -0.7 2,592,085 - -1.0 2,592,085 - -1.9 2,592,107 + -0.1 2,592,131 + +0.1 2,592,207 - -0.4 2,592,221 + +0.6 2,592,423 + ABZR88_RS10565 0.25 +0.8 2,592,424 - ABZR88_RS10565 0.25 -0.1 2,592,424 - ABZR88_RS10565 0.25 +0.1 2,592,424 - ABZR88_RS10565 0.25 +0.1 2,592,426 - ABZR88_RS10565 0.25 +0.5 2,592,426 - ABZR88_RS10565 0.25 +0.3 2,592,538 - ABZR88_RS10565 0.43 +0.8 2,592,666 + ABZR88_RS10565 0.64 +0.2 2,592,667 - ABZR88_RS10565 0.64 +0.2 2,592,678 - ABZR88_RS10565 0.66 -0.9 2,592,832 - +0.1 2,592,920 - -0.4 2,592,924 + +0.4 2,592,925 - +0.3 2,592,939 - +0.8 2,592,969 + ABZR88_RS10570 0.14 +0.6 2,593,036 + ABZR88_RS10570 0.29 -0.7 2,593,037 - ABZR88_RS10570 0.29 +0.2
Or see this region's nucleotide sequence