Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS10460

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS10455 and ABZR88_RS10460 are separated by 6 nucleotidesABZR88_RS10460 and ABZR88_RS10465 are separated by 67 nucleotidesABZR88_RS10465 and ABZR88_RS10470 are separated by 48 nucleotides ABZR88_RS10455: ABZR88_RS10455 - HAD-IIA family hydrolase, at 2,565,595 to 2,566,449 _RS10455 ABZR88_RS10460: ABZR88_RS10460 - hypothetical protein, at 2,566,456 to 2,567,493 _RS10460 ABZR88_RS10465: ABZR88_RS10465 - GxxExxY protein, at 2,567,561 to 2,567,965 _RS10465 ABZR88_RS10470: ABZR88_RS10470 - glutamine synthetase family protein, at 2,568,014 to 2,569,372 _RS10470 Position (kb) 2566 2567 2568Strain fitness (log2 ratio) -2 -1 0 1 2at 2565.467 kb on + strandat 2565.522 kb on + strandat 2565.540 kb on - strandat 2565.586 kb on + strandat 2565.630 kb on - strandat 2565.655 kb on - strandat 2565.698 kb on - strand, within ABZR88_RS10455at 2565.822 kb on + strand, within ABZR88_RS10455at 2565.893 kb on - strand, within ABZR88_RS10455at 2565.948 kb on + strand, within ABZR88_RS10455at 2565.952 kb on - strand, within ABZR88_RS10455at 2566.060 kb on - strand, within ABZR88_RS10455at 2566.117 kb on + strand, within ABZR88_RS10455at 2566.230 kb on + strand, within ABZR88_RS10455at 2566.253 kb on + strand, within ABZR88_RS10455at 2566.443 kb on + strandat 2566.443 kb on + strandat 2566.520 kb on + strandat 2566.595 kb on + strand, within ABZR88_RS10460at 2566.617 kb on - strand, within ABZR88_RS10460at 2566.722 kb on - strand, within ABZR88_RS10460at 2566.729 kb on + strand, within ABZR88_RS10460at 2566.888 kb on - strand, within ABZR88_RS10460at 2566.910 kb on + strand, within ABZR88_RS10460at 2566.911 kb on - strand, within ABZR88_RS10460at 2567.020 kb on - strand, within ABZR88_RS10460at 2567.173 kb on + strand, within ABZR88_RS10460at 2567.214 kb on - strand, within ABZR88_RS10460at 2567.218 kb on - strand, within ABZR88_RS10460at 2567.387 kb on + strand, within ABZR88_RS10460at 2567.394 kb on - strandat 2567.404 kb on + strandat 2567.404 kb on + strandat 2567.405 kb on - strandat 2567.470 kb on - strandat 2567.599 kb on + strandat 2567.642 kb on + strand, within ABZR88_RS10465at 2567.660 kb on - strand, within ABZR88_RS10465at 2567.681 kb on + strand, within ABZR88_RS10465at 2567.699 kb on + strand, within ABZR88_RS10465at 2567.796 kb on + strand, within ABZR88_RS10465at 2567.950 kb on + strandat 2568.015 kb on + strandat 2568.229 kb on + strand, within ABZR88_RS10470at 2568.229 kb on + strand, within ABZR88_RS10470at 2568.239 kb on + strand, within ABZR88_RS10470at 2568.466 kb on - strand, within ABZR88_RS10470at 2568.493 kb on - strand, within ABZR88_RS10470

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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2,565,467 + +0.3
2,565,522 + -0.2
2,565,540 - +0.7
2,565,586 + -0.1
2,565,630 - +1.1
2,565,655 - -0.6
2,565,698 - ABZR88_RS10455 0.12 -0.4
2,565,822 + ABZR88_RS10455 0.27 +1.7
2,565,893 - ABZR88_RS10455 0.35 +0.6
2,565,948 + ABZR88_RS10455 0.41 +1.0
2,565,952 - ABZR88_RS10455 0.42 +2.1
2,566,060 - ABZR88_RS10455 0.54 +0.3
2,566,117 + ABZR88_RS10455 0.61 +0.6
2,566,230 + ABZR88_RS10455 0.74 +2.7
2,566,253 + ABZR88_RS10455 0.77 +0.0
2,566,443 + +1.1
2,566,443 + -0.7
2,566,520 + -0.4
2,566,595 + ABZR88_RS10460 0.13 -2.2
2,566,617 - ABZR88_RS10460 0.16 -1.5
2,566,722 - ABZR88_RS10460 0.26 +0.1
2,566,729 + ABZR88_RS10460 0.26 -0.7
2,566,888 - ABZR88_RS10460 0.42 -0.9
2,566,910 + ABZR88_RS10460 0.44 +0.3
2,566,911 - ABZR88_RS10460 0.44 -1.6
2,567,020 - ABZR88_RS10460 0.54 -0.8
2,567,173 + ABZR88_RS10460 0.69 -0.4
2,567,214 - ABZR88_RS10460 0.73 -1.2
2,567,218 - ABZR88_RS10460 0.73 -0.1
2,567,387 + ABZR88_RS10460 0.90 -0.7
2,567,394 - -1.1
2,567,404 + -1.7
2,567,404 + -0.6
2,567,405 - -0.3
2,567,470 - +0.9
2,567,599 + +0.1
2,567,642 + ABZR88_RS10465 0.20 +0.1
2,567,660 - ABZR88_RS10465 0.24 +0.8
2,567,681 + ABZR88_RS10465 0.30 +0.6
2,567,699 + ABZR88_RS10465 0.34 +0.2
2,567,796 + ABZR88_RS10465 0.58 +0.3
2,567,950 + +0.1
2,568,015 + +0.9
2,568,229 + ABZR88_RS10470 0.16 -1.0
2,568,229 + ABZR88_RS10470 0.16 -0.3
2,568,239 + ABZR88_RS10470 0.17 -1.3
2,568,466 - ABZR88_RS10470 0.33 +0.6
2,568,493 - ABZR88_RS10470 0.35 -1.3

Or see this region's nucleotide sequence