Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS10455 and ABZR88_RS10460 are separated by 6 nucleotides ABZR88_RS10460 and ABZR88_RS10465 are separated by 67 nucleotides ABZR88_RS10465 and ABZR88_RS10470 are separated by 48 nucleotides
ABZR88_RS10455: ABZR88_RS10455 - HAD-IIA family hydrolase, at 2,565,595 to 2,566,449
_RS10455
ABZR88_RS10460: ABZR88_RS10460 - hypothetical protein, at 2,566,456 to 2,567,493
_RS10460
ABZR88_RS10465: ABZR88_RS10465 - GxxExxY protein, at 2,567,561 to 2,567,965
_RS10465
ABZR88_RS10470: ABZR88_RS10470 - glutamine synthetase family protein, at 2,568,014 to 2,569,372
_RS10470
Position (kb)
2566
2567
2568 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2565.467 kb on + strand at 2565.522 kb on + strand at 2565.540 kb on - strand at 2565.586 kb on + strand at 2565.630 kb on - strand at 2565.655 kb on - strand at 2565.698 kb on - strand, within ABZR88_RS10455 at 2565.822 kb on + strand, within ABZR88_RS10455 at 2565.893 kb on - strand, within ABZR88_RS10455 at 2565.948 kb on + strand, within ABZR88_RS10455 at 2565.952 kb on - strand, within ABZR88_RS10455 at 2566.060 kb on - strand, within ABZR88_RS10455 at 2566.117 kb on + strand, within ABZR88_RS10455 at 2566.230 kb on + strand, within ABZR88_RS10455 at 2566.253 kb on + strand, within ABZR88_RS10455 at 2566.443 kb on + strand at 2566.443 kb on + strand at 2566.520 kb on + strand at 2566.595 kb on + strand, within ABZR88_RS10460 at 2566.617 kb on - strand, within ABZR88_RS10460 at 2566.722 kb on - strand, within ABZR88_RS10460 at 2566.729 kb on + strand, within ABZR88_RS10460 at 2566.888 kb on - strand, within ABZR88_RS10460 at 2566.910 kb on + strand, within ABZR88_RS10460 at 2566.911 kb on - strand, within ABZR88_RS10460 at 2567.020 kb on - strand, within ABZR88_RS10460 at 2567.173 kb on + strand, within ABZR88_RS10460 at 2567.214 kb on - strand, within ABZR88_RS10460 at 2567.218 kb on - strand, within ABZR88_RS10460 at 2567.387 kb on + strand, within ABZR88_RS10460 at 2567.394 kb on - strand at 2567.404 kb on + strand at 2567.404 kb on + strand at 2567.405 kb on - strand at 2567.470 kb on - strand at 2567.599 kb on + strand at 2567.642 kb on + strand, within ABZR88_RS10465 at 2567.660 kb on - strand, within ABZR88_RS10465 at 2567.681 kb on + strand, within ABZR88_RS10465 at 2567.699 kb on + strand, within ABZR88_RS10465 at 2567.796 kb on + strand, within ABZR88_RS10465 at 2567.950 kb on + strand at 2568.015 kb on + strand at 2568.229 kb on + strand, within ABZR88_RS10470 at 2568.229 kb on + strand, within ABZR88_RS10470 at 2568.239 kb on + strand, within ABZR88_RS10470 at 2568.466 kb on - strand, within ABZR88_RS10470 at 2568.493 kb on - strand, within ABZR88_RS10470
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 2,565,467 + +0.3 2,565,522 + -0.2 2,565,540 - +0.7 2,565,586 + -0.1 2,565,630 - +1.1 2,565,655 - -0.6 2,565,698 - ABZR88_RS10455 0.12 -0.4 2,565,822 + ABZR88_RS10455 0.27 +1.7 2,565,893 - ABZR88_RS10455 0.35 +0.6 2,565,948 + ABZR88_RS10455 0.41 +1.0 2,565,952 - ABZR88_RS10455 0.42 +2.1 2,566,060 - ABZR88_RS10455 0.54 +0.3 2,566,117 + ABZR88_RS10455 0.61 +0.6 2,566,230 + ABZR88_RS10455 0.74 +2.7 2,566,253 + ABZR88_RS10455 0.77 +0.0 2,566,443 + +1.1 2,566,443 + -0.7 2,566,520 + -0.4 2,566,595 + ABZR88_RS10460 0.13 -2.2 2,566,617 - ABZR88_RS10460 0.16 -1.5 2,566,722 - ABZR88_RS10460 0.26 +0.1 2,566,729 + ABZR88_RS10460 0.26 -0.7 2,566,888 - ABZR88_RS10460 0.42 -0.9 2,566,910 + ABZR88_RS10460 0.44 +0.3 2,566,911 - ABZR88_RS10460 0.44 -1.6 2,567,020 - ABZR88_RS10460 0.54 -0.8 2,567,173 + ABZR88_RS10460 0.69 -0.4 2,567,214 - ABZR88_RS10460 0.73 -1.2 2,567,218 - ABZR88_RS10460 0.73 -0.1 2,567,387 + ABZR88_RS10460 0.90 -0.7 2,567,394 - -1.1 2,567,404 + -1.7 2,567,404 + -0.6 2,567,405 - -0.3 2,567,470 - +0.9 2,567,599 + +0.1 2,567,642 + ABZR88_RS10465 0.20 +0.1 2,567,660 - ABZR88_RS10465 0.24 +0.8 2,567,681 + ABZR88_RS10465 0.30 +0.6 2,567,699 + ABZR88_RS10465 0.34 +0.2 2,567,796 + ABZR88_RS10465 0.58 +0.3 2,567,950 + +0.1 2,568,015 + +0.9 2,568,229 + ABZR88_RS10470 0.16 -1.0 2,568,229 + ABZR88_RS10470 0.16 -0.3 2,568,239 + ABZR88_RS10470 0.17 -1.3 2,568,466 - ABZR88_RS10470 0.33 +0.6 2,568,493 - ABZR88_RS10470 0.35 -1.3
Or see this region's nucleotide sequence