Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS10400

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS10395 and ABZR88_RS10400 are separated by 167 nucleotidesABZR88_RS10400 and ABZR88_RS10405 are separated by 149 nucleotidesABZR88_RS10405 and ABZR88_RS10410 are separated by 0 nucleotides ABZR88_RS10395: ABZR88_RS10395 - molybdate ABC transporter substrate-binding protein, at 2,551,799 to 2,552,563 _RS10395 ABZR88_RS10400: ABZR88_RS10400 - Glu/Leu/Phe/Val dehydrogenase, at 2,552,731 to 2,554,164 _RS10400 ABZR88_RS10405: ABZR88_RS10405 - CcmD family protein, at 2,554,314 to 2,554,523 _RS10405 ABZR88_RS10410: ABZR88_RS10410 - cytochrome c biogenesis protein, at 2,554,524 to 2,555,186 _RS10410 Position (kb) 2552 2553 2554 2555Strain fitness (log2 ratio) -2 -1 0 1 2at 2551.806 kb on - strandat 2551.810 kb on + strandat 2551.857 kb on + strandat 2551.858 kb on - strandat 2551.889 kb on - strand, within ABZR88_RS10395at 2552.044 kb on + strand, within ABZR88_RS10395at 2552.050 kb on + strand, within ABZR88_RS10395at 2552.267 kb on + strand, within ABZR88_RS10395at 2552.268 kb on - strand, within ABZR88_RS10395at 2552.347 kb on - strand, within ABZR88_RS10395at 2552.540 kb on + strandat 2552.573 kb on + strandat 2552.740 kb on + strandat 2552.868 kb on + strandat 2552.947 kb on + strand, within ABZR88_RS10400at 2552.948 kb on - strand, within ABZR88_RS10400at 2552.948 kb on - strand, within ABZR88_RS10400at 2552.956 kb on - strand, within ABZR88_RS10400at 2553.089 kb on + strand, within ABZR88_RS10400at 2553.089 kb on + strand, within ABZR88_RS10400at 2553.090 kb on - strand, within ABZR88_RS10400at 2553.090 kb on - strand, within ABZR88_RS10400at 2553.090 kb on - strand, within ABZR88_RS10400at 2553.208 kb on - strand, within ABZR88_RS10400at 2553.445 kb on + strand, within ABZR88_RS10400at 2553.543 kb on + strand, within ABZR88_RS10400at 2553.651 kb on + strand, within ABZR88_RS10400at 2553.651 kb on + strand, within ABZR88_RS10400at 2553.652 kb on - strand, within ABZR88_RS10400at 2553.715 kb on + strand, within ABZR88_RS10400at 2553.895 kb on + strand, within ABZR88_RS10400at 2554.038 kb on + strandat 2554.040 kb on + strandat 2554.080 kb on + strandat 2554.081 kb on - strandat 2554.167 kb on + strandat 2554.167 kb on + strandat 2554.168 kb on - strandat 2554.168 kb on - strandat 2554.173 kb on + strandat 2554.174 kb on - strandat 2554.174 kb on - strandat 2554.174 kb on - strandat 2554.209 kb on + strandat 2554.254 kb on - strandat 2554.296 kb on + strandat 2554.544 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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2,551,806 - -0.4
2,551,810 + +0.7
2,551,857 + +1.1
2,551,858 - -0.8
2,551,889 - ABZR88_RS10395 0.12 +0.5
2,552,044 + ABZR88_RS10395 0.32 +0.1
2,552,050 + ABZR88_RS10395 0.33 -0.2
2,552,267 + ABZR88_RS10395 0.61 +0.2
2,552,268 - ABZR88_RS10395 0.61 -0.0
2,552,347 - ABZR88_RS10395 0.72 +2.0
2,552,540 + +0.6
2,552,573 + +0.0
2,552,740 + -1.6
2,552,868 + -1.2
2,552,947 + ABZR88_RS10400 0.15 -1.4
2,552,948 - ABZR88_RS10400 0.15 -1.0
2,552,948 - ABZR88_RS10400 0.15 +0.4
2,552,956 - ABZR88_RS10400 0.16 -2.0
2,553,089 + ABZR88_RS10400 0.25 -1.0
2,553,089 + ABZR88_RS10400 0.25 -0.7
2,553,090 - ABZR88_RS10400 0.25 -0.9
2,553,090 - ABZR88_RS10400 0.25 -1.9
2,553,090 - ABZR88_RS10400 0.25 -1.2
2,553,208 - ABZR88_RS10400 0.33 -1.7
2,553,445 + ABZR88_RS10400 0.50 -0.2
2,553,543 + ABZR88_RS10400 0.57 -0.8
2,553,651 + ABZR88_RS10400 0.64 -0.9
2,553,651 + ABZR88_RS10400 0.64 -0.9
2,553,652 - ABZR88_RS10400 0.64 -0.9
2,553,715 + ABZR88_RS10400 0.69 -1.7
2,553,895 + ABZR88_RS10400 0.81 -1.4
2,554,038 + -0.9
2,554,040 + +0.1
2,554,080 + -0.7
2,554,081 - -0.3
2,554,167 + -1.8
2,554,167 + -0.9
2,554,168 - +0.9
2,554,168 - -1.2
2,554,173 + -2.2
2,554,174 - -0.5
2,554,174 - -0.9
2,554,174 - -2.0
2,554,209 + -0.4
2,554,254 - -1.4
2,554,296 + -1.6
2,554,544 - -0.4

Or see this region's nucleotide sequence