Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS10395 and ABZR88_RS10400 are separated by 167 nucleotides ABZR88_RS10400 and ABZR88_RS10405 are separated by 149 nucleotides ABZR88_RS10405 and ABZR88_RS10410 are separated by 0 nucleotides
ABZR88_RS10395: ABZR88_RS10395 - molybdate ABC transporter substrate-binding protein, at 2,551,799 to 2,552,563
_RS10395
ABZR88_RS10400: ABZR88_RS10400 - Glu/Leu/Phe/Val dehydrogenase, at 2,552,731 to 2,554,164
_RS10400
ABZR88_RS10405: ABZR88_RS10405 - CcmD family protein, at 2,554,314 to 2,554,523
_RS10405
ABZR88_RS10410: ABZR88_RS10410 - cytochrome c biogenesis protein, at 2,554,524 to 2,555,186
_RS10410
Position (kb)
2552
2553
2554
2555 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2551.806 kb on - strand at 2551.810 kb on + strand at 2551.857 kb on + strand at 2551.858 kb on - strand at 2551.889 kb on - strand, within ABZR88_RS10395 at 2552.044 kb on + strand, within ABZR88_RS10395 at 2552.050 kb on + strand, within ABZR88_RS10395 at 2552.267 kb on + strand, within ABZR88_RS10395 at 2552.268 kb on - strand, within ABZR88_RS10395 at 2552.347 kb on - strand, within ABZR88_RS10395 at 2552.540 kb on + strand at 2552.573 kb on + strand at 2552.740 kb on + strand at 2552.868 kb on + strand at 2552.947 kb on + strand, within ABZR88_RS10400 at 2552.948 kb on - strand, within ABZR88_RS10400 at 2552.948 kb on - strand, within ABZR88_RS10400 at 2552.956 kb on - strand, within ABZR88_RS10400 at 2553.089 kb on + strand, within ABZR88_RS10400 at 2553.089 kb on + strand, within ABZR88_RS10400 at 2553.090 kb on - strand, within ABZR88_RS10400 at 2553.090 kb on - strand, within ABZR88_RS10400 at 2553.090 kb on - strand, within ABZR88_RS10400 at 2553.208 kb on - strand, within ABZR88_RS10400 at 2553.445 kb on + strand, within ABZR88_RS10400 at 2553.543 kb on + strand, within ABZR88_RS10400 at 2553.651 kb on + strand, within ABZR88_RS10400 at 2553.651 kb on + strand, within ABZR88_RS10400 at 2553.652 kb on - strand, within ABZR88_RS10400 at 2553.715 kb on + strand, within ABZR88_RS10400 at 2553.895 kb on + strand, within ABZR88_RS10400 at 2554.038 kb on + strand at 2554.040 kb on + strand at 2554.080 kb on + strand at 2554.081 kb on - strand at 2554.167 kb on + strand at 2554.167 kb on + strand at 2554.168 kb on - strand at 2554.168 kb on - strand at 2554.173 kb on + strand at 2554.174 kb on - strand at 2554.174 kb on - strand at 2554.174 kb on - strand at 2554.209 kb on + strand at 2554.254 kb on - strand at 2554.296 kb on + strand at 2554.544 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 2,551,806 - -0.4 2,551,810 + +0.7 2,551,857 + +1.1 2,551,858 - -0.8 2,551,889 - ABZR88_RS10395 0.12 +0.5 2,552,044 + ABZR88_RS10395 0.32 +0.1 2,552,050 + ABZR88_RS10395 0.33 -0.2 2,552,267 + ABZR88_RS10395 0.61 +0.2 2,552,268 - ABZR88_RS10395 0.61 -0.0 2,552,347 - ABZR88_RS10395 0.72 +2.0 2,552,540 + +0.6 2,552,573 + +0.0 2,552,740 + -1.6 2,552,868 + -1.2 2,552,947 + ABZR88_RS10400 0.15 -1.4 2,552,948 - ABZR88_RS10400 0.15 -1.0 2,552,948 - ABZR88_RS10400 0.15 +0.4 2,552,956 - ABZR88_RS10400 0.16 -2.0 2,553,089 + ABZR88_RS10400 0.25 -1.0 2,553,089 + ABZR88_RS10400 0.25 -0.7 2,553,090 - ABZR88_RS10400 0.25 -0.9 2,553,090 - ABZR88_RS10400 0.25 -1.9 2,553,090 - ABZR88_RS10400 0.25 -1.2 2,553,208 - ABZR88_RS10400 0.33 -1.7 2,553,445 + ABZR88_RS10400 0.50 -0.2 2,553,543 + ABZR88_RS10400 0.57 -0.8 2,553,651 + ABZR88_RS10400 0.64 -0.9 2,553,651 + ABZR88_RS10400 0.64 -0.9 2,553,652 - ABZR88_RS10400 0.64 -0.9 2,553,715 + ABZR88_RS10400 0.69 -1.7 2,553,895 + ABZR88_RS10400 0.81 -1.4 2,554,038 + -0.9 2,554,040 + +0.1 2,554,080 + -0.7 2,554,081 - -0.3 2,554,167 + -1.8 2,554,167 + -0.9 2,554,168 - +0.9 2,554,168 - -1.2 2,554,173 + -2.2 2,554,174 - -0.5 2,554,174 - -0.9 2,554,174 - -2.0 2,554,209 + -0.4 2,554,254 - -1.4 2,554,296 + -1.6 2,554,544 - -0.4
Or see this region's nucleotide sequence