Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS10050

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS10045 and ABZR88_RS10050 are separated by 321 nucleotidesABZR88_RS10050 and ABZR88_RS10055 are separated by 85 nucleotidesABZR88_RS10055 and ABZR88_RS10060 are separated by 80 nucleotides ABZR88_RS10045: ABZR88_RS10045 - hypothetical protein, at 2,486,522 to 2,487,409 _RS10045 ABZR88_RS10050: ABZR88_RS10050 - sorbosone dehydrogenase family protein, at 2,487,731 to 2,489,011 _RS10050 ABZR88_RS10055: ABZR88_RS10055 - cytochrome c, at 2,489,097 to 2,489,537 _RS10055 ABZR88_RS10060: ABZR88_RS10060 - cytochrome-c peroxidase, at 2,489,618 to 2,490,784 _RS10060 Position (kb) 2487 2488 2489 2490Strain fitness (log2 ratio) -1 0 1 2at 2486.795 kb on - strand, within ABZR88_RS10045at 2486.815 kb on + strand, within ABZR88_RS10045at 2486.845 kb on + strand, within ABZR88_RS10045at 2486.846 kb on - strand, within ABZR88_RS10045at 2486.850 kb on + strand, within ABZR88_RS10045at 2486.880 kb on + strand, within ABZR88_RS10045at 2487.048 kb on + strand, within ABZR88_RS10045at 2487.049 kb on - strand, within ABZR88_RS10045at 2487.094 kb on + strand, within ABZR88_RS10045at 2487.103 kb on + strand, within ABZR88_RS10045at 2487.194 kb on + strand, within ABZR88_RS10045at 2487.222 kb on + strand, within ABZR88_RS10045at 2487.225 kb on + strand, within ABZR88_RS10045at 2487.228 kb on + strand, within ABZR88_RS10045at 2487.306 kb on - strand, within ABZR88_RS10045at 2487.321 kb on - strandat 2487.332 kb on + strandat 2487.333 kb on - strandat 2487.438 kb on - strandat 2487.462 kb on + strandat 2487.651 kb on + strandat 2487.703 kb on + strandat 2487.846 kb on + strandat 2487.970 kb on - strand, within ABZR88_RS10050at 2488.030 kb on + strand, within ABZR88_RS10050at 2488.030 kb on + strand, within ABZR88_RS10050at 2488.049 kb on - strand, within ABZR88_RS10050at 2488.226 kb on + strand, within ABZR88_RS10050at 2488.227 kb on - strand, within ABZR88_RS10050at 2488.244 kb on + strand, within ABZR88_RS10050at 2488.285 kb on + strand, within ABZR88_RS10050at 2488.405 kb on - strand, within ABZR88_RS10050at 2488.405 kb on - strand, within ABZR88_RS10050at 2488.519 kb on - strand, within ABZR88_RS10050at 2488.519 kb on - strand, within ABZR88_RS10050at 2488.655 kb on - strand, within ABZR88_RS10050at 2489.092 kb on + strandat 2489.232 kb on + strand, within ABZR88_RS10055at 2489.313 kb on + strand, within ABZR88_RS10055at 2489.397 kb on - strand, within ABZR88_RS10055at 2489.453 kb on + strand, within ABZR88_RS10055at 2489.458 kb on - strand, within ABZR88_RS10055at 2489.617 kb on + strandat 2489.879 kb on - strand, within ABZR88_RS10060at 2489.924 kb on - strand, within ABZR88_RS10060

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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2,486,795 - ABZR88_RS10045 0.31 +0.0
2,486,815 + ABZR88_RS10045 0.33 +0.8
2,486,845 + ABZR88_RS10045 0.36 -0.2
2,486,846 - ABZR88_RS10045 0.36 -0.3
2,486,850 + ABZR88_RS10045 0.37 +2.2
2,486,880 + ABZR88_RS10045 0.40 -0.0
2,487,048 + ABZR88_RS10045 0.59 -1.0
2,487,049 - ABZR88_RS10045 0.59 -0.5
2,487,094 + ABZR88_RS10045 0.64 +0.1
2,487,103 + ABZR88_RS10045 0.65 +2.0
2,487,194 + ABZR88_RS10045 0.76 +1.1
2,487,222 + ABZR88_RS10045 0.79 -0.7
2,487,225 + ABZR88_RS10045 0.79 -0.2
2,487,228 + ABZR88_RS10045 0.80 +0.6
2,487,306 - ABZR88_RS10045 0.88 -0.1
2,487,321 - +1.1
2,487,332 + -0.4
2,487,333 - +0.4
2,487,438 - +1.1
2,487,462 + -0.3
2,487,651 + -0.3
2,487,703 + -0.1
2,487,846 + +0.7
2,487,970 - ABZR88_RS10050 0.19 -1.3
2,488,030 + ABZR88_RS10050 0.23 -1.6
2,488,030 + ABZR88_RS10050 0.23 -0.5
2,488,049 - ABZR88_RS10050 0.25 -0.5
2,488,226 + ABZR88_RS10050 0.39 -0.7
2,488,227 - ABZR88_RS10050 0.39 -0.8
2,488,244 + ABZR88_RS10050 0.40 -0.8
2,488,285 + ABZR88_RS10050 0.43 -0.3
2,488,405 - ABZR88_RS10050 0.53 -0.1
2,488,405 - ABZR88_RS10050 0.53 +0.2
2,488,519 - ABZR88_RS10050 0.62 -0.1
2,488,519 - ABZR88_RS10050 0.62 -0.1
2,488,655 - ABZR88_RS10050 0.72 +0.2
2,489,092 + -1.3
2,489,232 + ABZR88_RS10055 0.31 -0.1
2,489,313 + ABZR88_RS10055 0.49 +0.4
2,489,397 - ABZR88_RS10055 0.68 -0.1
2,489,453 + ABZR88_RS10055 0.81 +0.5
2,489,458 - ABZR88_RS10055 0.82 -0.3
2,489,617 + +0.0
2,489,879 - ABZR88_RS10060 0.22 +0.3
2,489,924 - ABZR88_RS10060 0.26 -0.3

Or see this region's nucleotide sequence