Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS09980 and ABZR88_RS09985 are separated by 3 nucleotides ABZR88_RS09985 and ABZR88_RS09990 are separated by 123 nucleotides ABZR88_RS09990 and ABZR88_RS09995 are separated by 86 nucleotides
ABZR88_RS09980: ABZR88_RS09980 - PepSY-associated TM helix domain-containing protein, at 2,470,943 to 2,472,373
_RS09980
ABZR88_RS09985: ABZR88_RS09985 - TonB-dependent receptor, at 2,472,377 to 2,474,728
_RS09985
ABZR88_RS09990: ABZR88_RS09990 - hypothetical protein, at 2,474,852 to 2,475,223
_RS09990
ABZR88_RS09995: ABZR88_RS09995 - DinB family protein, at 2,475,310 to 2,475,768
_RS09995
Position (kb)
2472
2473
2474
2475 Strain fitness (log2 ratio)
-2
-1
0
1 at 2471.377 kb on - strand, within ABZR88_RS09980 at 2471.509 kb on + strand, within ABZR88_RS09980 at 2471.582 kb on + strand, within ABZR88_RS09980 at 2471.801 kb on + strand, within ABZR88_RS09980 at 2471.865 kb on - strand, within ABZR88_RS09980 at 2471.953 kb on + strand, within ABZR88_RS09980 at 2472.004 kb on - strand, within ABZR88_RS09980 at 2472.072 kb on + strand, within ABZR88_RS09980 at 2472.095 kb on + strand, within ABZR88_RS09980 at 2472.309 kb on - strand at 2472.321 kb on - strand at 2472.346 kb on - strand at 2472.439 kb on - strand at 2472.568 kb on - strand at 2472.611 kb on - strand at 2472.615 kb on + strand, within ABZR88_RS09985 at 2472.797 kb on - strand, within ABZR88_RS09985 at 2472.932 kb on - strand, within ABZR88_RS09985 at 2473.116 kb on + strand, within ABZR88_RS09985 at 2473.117 kb on - strand, within ABZR88_RS09985 at 2473.240 kb on - strand, within ABZR88_RS09985 at 2473.354 kb on - strand, within ABZR88_RS09985 at 2473.798 kb on - strand, within ABZR88_RS09985 at 2473.933 kb on - strand, within ABZR88_RS09985 at 2474.006 kb on - strand, within ABZR88_RS09985 at 2474.018 kb on + strand, within ABZR88_RS09985 at 2474.225 kb on - strand, within ABZR88_RS09985 at 2474.248 kb on + strand, within ABZR88_RS09985 at 2474.458 kb on + strand, within ABZR88_RS09985 at 2474.493 kb on + strand at 2474.829 kb on - strand at 2474.927 kb on + strand, within ABZR88_RS09990 at 2474.966 kb on - strand, within ABZR88_RS09990 at 2475.121 kb on + strand, within ABZR88_RS09990 at 2475.243 kb on + strand at 2475.331 kb on - strand at 2475.380 kb on - strand, within ABZR88_RS09995 at 2475.424 kb on - strand, within ABZR88_RS09995 at 2475.445 kb on + strand, within ABZR88_RS09995 at 2475.483 kb on - strand, within ABZR88_RS09995 at 2475.483 kb on - strand, within ABZR88_RS09995 at 2475.634 kb on + strand, within ABZR88_RS09995 at 2475.665 kb on - strand, within ABZR88_RS09995
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 2,471,377 - ABZR88_RS09980 0.30 -1.1 2,471,509 + ABZR88_RS09980 0.40 -1.1 2,471,582 + ABZR88_RS09980 0.45 -0.4 2,471,801 + ABZR88_RS09980 0.60 -2.1 2,471,865 - ABZR88_RS09980 0.64 -0.6 2,471,953 + ABZR88_RS09980 0.71 -0.0 2,472,004 - ABZR88_RS09980 0.74 +1.1 2,472,072 + ABZR88_RS09980 0.79 -0.9 2,472,095 + ABZR88_RS09980 0.81 -0.8 2,472,309 - -1.6 2,472,321 - -0.7 2,472,346 - +1.7 2,472,439 - -1.0 2,472,568 - -0.8 2,472,611 - -1.5 2,472,615 + ABZR88_RS09985 0.10 -1.3 2,472,797 - ABZR88_RS09985 0.18 -0.5 2,472,932 - ABZR88_RS09985 0.24 -1.6 2,473,116 + ABZR88_RS09985 0.31 +0.6 2,473,117 - ABZR88_RS09985 0.31 +1.7 2,473,240 - ABZR88_RS09985 0.37 -1.3 2,473,354 - ABZR88_RS09985 0.42 -1.5 2,473,798 - ABZR88_RS09985 0.60 -0.9 2,473,933 - ABZR88_RS09985 0.66 -1.1 2,474,006 - ABZR88_RS09985 0.69 +0.7 2,474,018 + ABZR88_RS09985 0.70 -0.7 2,474,225 - ABZR88_RS09985 0.79 -1.1 2,474,248 + ABZR88_RS09985 0.80 -2.0 2,474,458 + ABZR88_RS09985 0.88 -1.2 2,474,493 + +0.5 2,474,829 - +0.5 2,474,927 + ABZR88_RS09990 0.20 -0.9 2,474,966 - ABZR88_RS09990 0.31 -0.8 2,475,121 + ABZR88_RS09990 0.72 -0.9 2,475,243 + -1.5 2,475,331 - +0.4 2,475,380 - ABZR88_RS09995 0.15 -0.5 2,475,424 - ABZR88_RS09995 0.25 +1.7 2,475,445 + ABZR88_RS09995 0.29 +0.2 2,475,483 - ABZR88_RS09995 0.38 +1.0 2,475,483 - ABZR88_RS09995 0.38 -0.9 2,475,634 + ABZR88_RS09995 0.71 -0.3 2,475,665 - ABZR88_RS09995 0.77 -0.1
Or see this region's nucleotide sequence