Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS09985

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS09980 and ABZR88_RS09985 are separated by 3 nucleotidesABZR88_RS09985 and ABZR88_RS09990 are separated by 123 nucleotidesABZR88_RS09990 and ABZR88_RS09995 are separated by 86 nucleotides ABZR88_RS09980: ABZR88_RS09980 - PepSY-associated TM helix domain-containing protein, at 2,470,943 to 2,472,373 _RS09980 ABZR88_RS09985: ABZR88_RS09985 - TonB-dependent receptor, at 2,472,377 to 2,474,728 _RS09985 ABZR88_RS09990: ABZR88_RS09990 - hypothetical protein, at 2,474,852 to 2,475,223 _RS09990 ABZR88_RS09995: ABZR88_RS09995 - DinB family protein, at 2,475,310 to 2,475,768 _RS09995 Position (kb) 2472 2473 2474 2475Strain fitness (log2 ratio) -2 -1 0 1at 2471.377 kb on - strand, within ABZR88_RS09980at 2471.509 kb on + strand, within ABZR88_RS09980at 2471.582 kb on + strand, within ABZR88_RS09980at 2471.801 kb on + strand, within ABZR88_RS09980at 2471.865 kb on - strand, within ABZR88_RS09980at 2471.953 kb on + strand, within ABZR88_RS09980at 2472.004 kb on - strand, within ABZR88_RS09980at 2472.072 kb on + strand, within ABZR88_RS09980at 2472.095 kb on + strand, within ABZR88_RS09980at 2472.309 kb on - strandat 2472.321 kb on - strandat 2472.346 kb on - strandat 2472.439 kb on - strandat 2472.568 kb on - strandat 2472.611 kb on - strandat 2472.615 kb on + strand, within ABZR88_RS09985at 2472.797 kb on - strand, within ABZR88_RS09985at 2472.932 kb on - strand, within ABZR88_RS09985at 2473.116 kb on + strand, within ABZR88_RS09985at 2473.117 kb on - strand, within ABZR88_RS09985at 2473.240 kb on - strand, within ABZR88_RS09985at 2473.354 kb on - strand, within ABZR88_RS09985at 2473.798 kb on - strand, within ABZR88_RS09985at 2473.933 kb on - strand, within ABZR88_RS09985at 2474.006 kb on - strand, within ABZR88_RS09985at 2474.018 kb on + strand, within ABZR88_RS09985at 2474.225 kb on - strand, within ABZR88_RS09985at 2474.248 kb on + strand, within ABZR88_RS09985at 2474.458 kb on + strand, within ABZR88_RS09985at 2474.493 kb on + strandat 2474.829 kb on - strandat 2474.927 kb on + strand, within ABZR88_RS09990at 2474.966 kb on - strand, within ABZR88_RS09990at 2475.121 kb on + strand, within ABZR88_RS09990at 2475.243 kb on + strandat 2475.331 kb on - strandat 2475.380 kb on - strand, within ABZR88_RS09995at 2475.424 kb on - strand, within ABZR88_RS09995at 2475.445 kb on + strand, within ABZR88_RS09995at 2475.483 kb on - strand, within ABZR88_RS09995at 2475.483 kb on - strand, within ABZR88_RS09995at 2475.634 kb on + strand, within ABZR88_RS09995at 2475.665 kb on - strand, within ABZR88_RS09995

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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2,471,377 - ABZR88_RS09980 0.30 -1.1
2,471,509 + ABZR88_RS09980 0.40 -1.1
2,471,582 + ABZR88_RS09980 0.45 -0.4
2,471,801 + ABZR88_RS09980 0.60 -2.1
2,471,865 - ABZR88_RS09980 0.64 -0.6
2,471,953 + ABZR88_RS09980 0.71 -0.0
2,472,004 - ABZR88_RS09980 0.74 +1.1
2,472,072 + ABZR88_RS09980 0.79 -0.9
2,472,095 + ABZR88_RS09980 0.81 -0.8
2,472,309 - -1.6
2,472,321 - -0.7
2,472,346 - +1.7
2,472,439 - -1.0
2,472,568 - -0.8
2,472,611 - -1.5
2,472,615 + ABZR88_RS09985 0.10 -1.3
2,472,797 - ABZR88_RS09985 0.18 -0.5
2,472,932 - ABZR88_RS09985 0.24 -1.6
2,473,116 + ABZR88_RS09985 0.31 +0.6
2,473,117 - ABZR88_RS09985 0.31 +1.7
2,473,240 - ABZR88_RS09985 0.37 -1.3
2,473,354 - ABZR88_RS09985 0.42 -1.5
2,473,798 - ABZR88_RS09985 0.60 -0.9
2,473,933 - ABZR88_RS09985 0.66 -1.1
2,474,006 - ABZR88_RS09985 0.69 +0.7
2,474,018 + ABZR88_RS09985 0.70 -0.7
2,474,225 - ABZR88_RS09985 0.79 -1.1
2,474,248 + ABZR88_RS09985 0.80 -2.0
2,474,458 + ABZR88_RS09985 0.88 -1.2
2,474,493 + +0.5
2,474,829 - +0.5
2,474,927 + ABZR88_RS09990 0.20 -0.9
2,474,966 - ABZR88_RS09990 0.31 -0.8
2,475,121 + ABZR88_RS09990 0.72 -0.9
2,475,243 + -1.5
2,475,331 - +0.4
2,475,380 - ABZR88_RS09995 0.15 -0.5
2,475,424 - ABZR88_RS09995 0.25 +1.7
2,475,445 + ABZR88_RS09995 0.29 +0.2
2,475,483 - ABZR88_RS09995 0.38 +1.0
2,475,483 - ABZR88_RS09995 0.38 -0.9
2,475,634 + ABZR88_RS09995 0.71 -0.3
2,475,665 - ABZR88_RS09995 0.77 -0.1

Or see this region's nucleotide sequence