Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS09970

Experiment: R2A motility; outer cut

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS09960 and ABZR88_RS09965 overlap by 4 nucleotidesABZR88_RS09965 and ABZR88_RS09970 overlap by 4 nucleotidesABZR88_RS09970 and ABZR88_RS09975 are separated by 4 nucleotidesABZR88_RS09975 and ABZR88_RS09980 are separated by 2 nucleotides ABZR88_RS09960: ABZR88_RS09960 - cytochrome c, at 2,469,235 to 2,469,654 _RS09960 ABZR88_RS09965: ABZR88_RS09965 - SCO family protein, at 2,469,651 to 2,470,304 _RS09965 ABZR88_RS09970: ABZR88_RS09970 - hypothetical protein, at 2,470,301 to 2,470,726 _RS09970 ABZR88_RS09975: ABZR88_RS09975 - heavy metal-binding domain-containing protein, at 2,470,731 to 2,470,940 _RS09975 ABZR88_RS09980: ABZR88_RS09980 - PepSY-associated TM helix domain-containing protein, at 2,470,943 to 2,472,373 _RS09980 Position (kb) 2470 2471Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2469.315 kb on - strand, within ABZR88_RS09960at 2469.572 kb on + strand, within ABZR88_RS09960at 2469.606 kb on + strand, within ABZR88_RS09960at 2469.609 kb on + strand, within ABZR88_RS09960at 2469.613 kb on + strandat 2470.534 kb on - strand, within ABZR88_RS09970at 2470.675 kb on + strand, within ABZR88_RS09970at 2470.709 kb on + strandat 2470.710 kb on - strandat 2470.855 kb on - strand, within ABZR88_RS09975at 2470.886 kb on + strand, within ABZR88_RS09975at 2470.896 kb on + strand, within ABZR88_RS09975at 2470.927 kb on - strandat 2471.011 kb on + strandat 2471.018 kb on + strandat 2471.141 kb on + strand, within ABZR88_RS09980at 2471.145 kb on + strand, within ABZR88_RS09980at 2471.208 kb on + strand, within ABZR88_RS09980at 2471.231 kb on - strand, within ABZR88_RS09980at 2471.240 kb on - strand, within ABZR88_RS09980at 2471.268 kb on + strand, within ABZR88_RS09980at 2471.269 kb on - strand, within ABZR88_RS09980at 2471.344 kb on + strand, within ABZR88_RS09980at 2471.344 kb on + strand, within ABZR88_RS09980at 2471.377 kb on - strand, within ABZR88_RS09980at 2471.509 kb on + strand, within ABZR88_RS09980at 2471.582 kb on + strand, within ABZR88_RS09980

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
remove
2,469,315 - ABZR88_RS09960 0.19 -3.3
2,469,572 + ABZR88_RS09960 0.80 -0.5
2,469,606 + ABZR88_RS09960 0.88 -2.7
2,469,609 + ABZR88_RS09960 0.89 -1.2
2,469,613 + -0.9
2,470,534 - ABZR88_RS09970 0.55 -1.3
2,470,675 + ABZR88_RS09970 0.88 -2.9
2,470,709 + +0.3
2,470,710 - -1.4
2,470,855 - ABZR88_RS09975 0.59 +2.5
2,470,886 + ABZR88_RS09975 0.74 +2.1
2,470,896 + ABZR88_RS09975 0.79 -1.5
2,470,927 - -2.2
2,471,011 + -0.9
2,471,018 + -1.4
2,471,141 + ABZR88_RS09980 0.14 -1.1
2,471,145 + ABZR88_RS09980 0.14 -1.2
2,471,208 + ABZR88_RS09980 0.19 -0.9
2,471,231 - ABZR88_RS09980 0.20 -0.4
2,471,240 - ABZR88_RS09980 0.21 +1.9
2,471,268 + ABZR88_RS09980 0.23 -0.5
2,471,269 - ABZR88_RS09980 0.23 -3.0
2,471,344 + ABZR88_RS09980 0.28 -2.0
2,471,344 + ABZR88_RS09980 0.28 -0.5
2,471,377 - ABZR88_RS09980 0.30 -1.1
2,471,509 + ABZR88_RS09980 0.40 -1.1
2,471,582 + ABZR88_RS09980 0.45 -0.4

Or see this region's nucleotide sequence