Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS09960 and ABZR88_RS09965 overlap by 4 nucleotides ABZR88_RS09965 and ABZR88_RS09970 overlap by 4 nucleotides ABZR88_RS09970 and ABZR88_RS09975 are separated by 4 nucleotides ABZR88_RS09975 and ABZR88_RS09980 are separated by 2 nucleotides
ABZR88_RS09960: ABZR88_RS09960 - cytochrome c, at 2,469,235 to 2,469,654
_RS09960
ABZR88_RS09965: ABZR88_RS09965 - SCO family protein, at 2,469,651 to 2,470,304
_RS09965
ABZR88_RS09970: ABZR88_RS09970 - hypothetical protein, at 2,470,301 to 2,470,726
_RS09970
ABZR88_RS09975: ABZR88_RS09975 - heavy metal-binding domain-containing protein, at 2,470,731 to 2,470,940
_RS09975
ABZR88_RS09980: ABZR88_RS09980 - PepSY-associated TM helix domain-containing protein, at 2,470,943 to 2,472,373
_RS09980
Position (kb)
2470
2471 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2469.315 kb on - strand, within ABZR88_RS09960 at 2469.572 kb on + strand, within ABZR88_RS09960 at 2469.606 kb on + strand, within ABZR88_RS09960 at 2469.609 kb on + strand, within ABZR88_RS09960 at 2469.613 kb on + strand at 2470.534 kb on - strand, within ABZR88_RS09970 at 2470.675 kb on + strand, within ABZR88_RS09970 at 2470.709 kb on + strand at 2470.710 kb on - strand at 2470.855 kb on - strand, within ABZR88_RS09975 at 2470.886 kb on + strand, within ABZR88_RS09975 at 2470.896 kb on + strand, within ABZR88_RS09975 at 2470.927 kb on - strand at 2471.011 kb on + strand at 2471.018 kb on + strand at 2471.141 kb on + strand, within ABZR88_RS09980 at 2471.145 kb on + strand, within ABZR88_RS09980 at 2471.208 kb on + strand, within ABZR88_RS09980 at 2471.231 kb on - strand, within ABZR88_RS09980 at 2471.240 kb on - strand, within ABZR88_RS09980 at 2471.268 kb on + strand, within ABZR88_RS09980 at 2471.269 kb on - strand, within ABZR88_RS09980 at 2471.344 kb on + strand, within ABZR88_RS09980 at 2471.344 kb on + strand, within ABZR88_RS09980 at 2471.377 kb on - strand, within ABZR88_RS09980 at 2471.509 kb on + strand, within ABZR88_RS09980 at 2471.582 kb on + strand, within ABZR88_RS09980
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 2,469,315 - ABZR88_RS09960 0.19 -3.3 2,469,572 + ABZR88_RS09960 0.80 -0.5 2,469,606 + ABZR88_RS09960 0.88 -2.7 2,469,609 + ABZR88_RS09960 0.89 -1.2 2,469,613 + -0.9 2,470,534 - ABZR88_RS09970 0.55 -1.3 2,470,675 + ABZR88_RS09970 0.88 -2.9 2,470,709 + +0.3 2,470,710 - -1.4 2,470,855 - ABZR88_RS09975 0.59 +2.5 2,470,886 + ABZR88_RS09975 0.74 +2.1 2,470,896 + ABZR88_RS09975 0.79 -1.5 2,470,927 - -2.2 2,471,011 + -0.9 2,471,018 + -1.4 2,471,141 + ABZR88_RS09980 0.14 -1.1 2,471,145 + ABZR88_RS09980 0.14 -1.2 2,471,208 + ABZR88_RS09980 0.19 -0.9 2,471,231 - ABZR88_RS09980 0.20 -0.4 2,471,240 - ABZR88_RS09980 0.21 +1.9 2,471,268 + ABZR88_RS09980 0.23 -0.5 2,471,269 - ABZR88_RS09980 0.23 -3.0 2,471,344 + ABZR88_RS09980 0.28 -2.0 2,471,344 + ABZR88_RS09980 0.28 -0.5 2,471,377 - ABZR88_RS09980 0.30 -1.1 2,471,509 + ABZR88_RS09980 0.40 -1.1 2,471,582 + ABZR88_RS09980 0.45 -0.4
Or see this region's nucleotide sequence