Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS09950 and ABZR88_RS09955 are separated by 54 nucleotides ABZR88_RS09955 and ABZR88_RS09960 are separated by 129 nucleotides ABZR88_RS09960 and ABZR88_RS09965 overlap by 4 nucleotides ABZR88_RS09965 and ABZR88_RS09970 overlap by 4 nucleotides
ABZR88_RS09950: ABZR88_RS09950 - prolipoprotein diacylglyceryl transferase, at 2,467,555 to 2,468,322
_RS09950
ABZR88_RS09955: ABZR88_RS09955 - carboxypeptidase-like regulatory domain-containing protein, at 2,468,377 to 2,469,105
_RS09955
ABZR88_RS09960: ABZR88_RS09960 - cytochrome c, at 2,469,235 to 2,469,654
_RS09960
ABZR88_RS09965: ABZR88_RS09965 - SCO family protein, at 2,469,651 to 2,470,304
_RS09965
ABZR88_RS09970: ABZR88_RS09970 - hypothetical protein, at 2,470,301 to 2,470,726
_RS09970
Position (kb)
2469
2470 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2468.433 kb on - strand at 2468.490 kb on + strand, within ABZR88_RS09955 at 2468.498 kb on + strand, within ABZR88_RS09955 at 2468.527 kb on + strand, within ABZR88_RS09955 at 2468.579 kb on - strand, within ABZR88_RS09955 at 2468.625 kb on + strand, within ABZR88_RS09955 at 2468.636 kb on - strand, within ABZR88_RS09955 at 2468.656 kb on + strand, within ABZR88_RS09955 at 2468.739 kb on + strand, within ABZR88_RS09955 at 2468.758 kb on + strand, within ABZR88_RS09955 at 2468.886 kb on - strand, within ABZR88_RS09955 at 2468.892 kb on + strand, within ABZR88_RS09955 at 2469.105 kb on + strand at 2469.110 kb on + strand at 2469.137 kb on + strand at 2469.176 kb on + strand at 2469.229 kb on + strand at 2469.236 kb on + strand at 2469.315 kb on - strand, within ABZR88_RS09960 at 2469.572 kb on + strand, within ABZR88_RS09960 at 2469.606 kb on + strand, within ABZR88_RS09960 at 2469.609 kb on + strand, within ABZR88_RS09960 at 2469.613 kb on + strand at 2470.534 kb on - strand, within ABZR88_RS09970
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 2,468,433 - -0.5 2,468,490 + ABZR88_RS09955 0.16 -0.1 2,468,498 + ABZR88_RS09955 0.17 -0.7 2,468,527 + ABZR88_RS09955 0.21 +0.1 2,468,579 - ABZR88_RS09955 0.28 -0.5 2,468,625 + ABZR88_RS09955 0.34 -0.0 2,468,636 - ABZR88_RS09955 0.36 +0.4 2,468,656 + ABZR88_RS09955 0.38 -0.1 2,468,739 + ABZR88_RS09955 0.50 +0.1 2,468,758 + ABZR88_RS09955 0.52 -0.2 2,468,886 - ABZR88_RS09955 0.70 +0.1 2,468,892 + ABZR88_RS09955 0.71 +0.2 2,469,105 + -0.4 2,469,110 + -0.2 2,469,137 + -0.3 2,469,176 + +1.1 2,469,229 + -1.2 2,469,236 + -0.3 2,469,315 - ABZR88_RS09960 0.19 -3.3 2,469,572 + ABZR88_RS09960 0.80 -0.5 2,469,606 + ABZR88_RS09960 0.88 -2.7 2,469,609 + ABZR88_RS09960 0.89 -1.2 2,469,613 + -0.9 2,470,534 - ABZR88_RS09970 0.55 -1.3
Or see this region's nucleotide sequence