Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS09960

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS09950 and ABZR88_RS09955 are separated by 54 nucleotidesABZR88_RS09955 and ABZR88_RS09960 are separated by 129 nucleotidesABZR88_RS09960 and ABZR88_RS09965 overlap by 4 nucleotidesABZR88_RS09965 and ABZR88_RS09970 overlap by 4 nucleotides ABZR88_RS09950: ABZR88_RS09950 - prolipoprotein diacylglyceryl transferase, at 2,467,555 to 2,468,322 _RS09950 ABZR88_RS09955: ABZR88_RS09955 - carboxypeptidase-like regulatory domain-containing protein, at 2,468,377 to 2,469,105 _RS09955 ABZR88_RS09960: ABZR88_RS09960 - cytochrome c, at 2,469,235 to 2,469,654 _RS09960 ABZR88_RS09965: ABZR88_RS09965 - SCO family protein, at 2,469,651 to 2,470,304 _RS09965 ABZR88_RS09970: ABZR88_RS09970 - hypothetical protein, at 2,470,301 to 2,470,726 _RS09970 Position (kb) 2469 2470Strain fitness (log2 ratio) -3 -2 -1 0 1at 2468.433 kb on - strandat 2468.490 kb on + strand, within ABZR88_RS09955at 2468.498 kb on + strand, within ABZR88_RS09955at 2468.527 kb on + strand, within ABZR88_RS09955at 2468.579 kb on - strand, within ABZR88_RS09955at 2468.625 kb on + strand, within ABZR88_RS09955at 2468.636 kb on - strand, within ABZR88_RS09955at 2468.656 kb on + strand, within ABZR88_RS09955at 2468.739 kb on + strand, within ABZR88_RS09955at 2468.758 kb on + strand, within ABZR88_RS09955at 2468.886 kb on - strand, within ABZR88_RS09955at 2468.892 kb on + strand, within ABZR88_RS09955at 2469.105 kb on + strandat 2469.110 kb on + strandat 2469.137 kb on + strandat 2469.176 kb on + strandat 2469.229 kb on + strandat 2469.236 kb on + strandat 2469.315 kb on - strand, within ABZR88_RS09960at 2469.572 kb on + strand, within ABZR88_RS09960at 2469.606 kb on + strand, within ABZR88_RS09960at 2469.609 kb on + strand, within ABZR88_RS09960at 2469.613 kb on + strandat 2470.534 kb on - strand, within ABZR88_RS09970

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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2,468,433 - -0.5
2,468,490 + ABZR88_RS09955 0.16 -0.1
2,468,498 + ABZR88_RS09955 0.17 -0.7
2,468,527 + ABZR88_RS09955 0.21 +0.1
2,468,579 - ABZR88_RS09955 0.28 -0.5
2,468,625 + ABZR88_RS09955 0.34 -0.0
2,468,636 - ABZR88_RS09955 0.36 +0.4
2,468,656 + ABZR88_RS09955 0.38 -0.1
2,468,739 + ABZR88_RS09955 0.50 +0.1
2,468,758 + ABZR88_RS09955 0.52 -0.2
2,468,886 - ABZR88_RS09955 0.70 +0.1
2,468,892 + ABZR88_RS09955 0.71 +0.2
2,469,105 + -0.4
2,469,110 + -0.2
2,469,137 + -0.3
2,469,176 + +1.1
2,469,229 + -1.2
2,469,236 + -0.3
2,469,315 - ABZR88_RS09960 0.19 -3.3
2,469,572 + ABZR88_RS09960 0.80 -0.5
2,469,606 + ABZR88_RS09960 0.88 -2.7
2,469,609 + ABZR88_RS09960 0.89 -1.2
2,469,613 + -0.9
2,470,534 - ABZR88_RS09970 0.55 -1.3

Or see this region's nucleotide sequence