Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS09870

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS09860 and ABZR88_RS09865 are separated by 2 nucleotidesABZR88_RS09865 and ABZR88_RS09870 are separated by 116 nucleotidesABZR88_RS09870 and ABZR88_RS09875 are separated by 128 nucleotides ABZR88_RS09860: ABZR88_RS09860 - acetylglutamate kinase, at 2,451,298 to 2,452,092 _RS09860 ABZR88_RS09865: ABZR88_RS09865 - pyrroline-5-carboxylate reductase, at 2,452,095 to 2,452,904 _RS09865 ABZR88_RS09870: ABZR88_RS09870 - aspartate kinase, at 2,453,021 to 2,454,397 _RS09870 ABZR88_RS09875: ABZR88_RS09875 - DNA topoisomerase IB, at 2,454,526 to 2,455,626 _RS09875 Position (kb) 2453 2454 2455Strain fitness (log2 ratio) -2 -1 0 1 2at 2452.110 kb on - strandat 2452.111 kb on + strandat 2452.193 kb on + strand, within ABZR88_RS09865at 2452.253 kb on + strand, within ABZR88_RS09865at 2452.289 kb on + strand, within ABZR88_RS09865at 2452.301 kb on - strand, within ABZR88_RS09865at 2452.525 kb on + strand, within ABZR88_RS09865at 2452.664 kb on + strand, within ABZR88_RS09865at 2452.718 kb on + strand, within ABZR88_RS09865at 2452.718 kb on + strand, within ABZR88_RS09865at 2452.781 kb on - strand, within ABZR88_RS09865at 2452.910 kb on + strandat 2452.911 kb on - strandat 2452.946 kb on + strandat 2453.004 kb on + strandat 2453.005 kb on - strandat 2453.009 kb on + strandat 2453.009 kb on + strandat 2453.010 kb on - strandat 2453.073 kb on + strandat 2453.744 kb on - strand, within ABZR88_RS09870at 2453.829 kb on + strand, within ABZR88_RS09870at 2453.974 kb on - strand, within ABZR88_RS09870at 2454.087 kb on - strand, within ABZR88_RS09870at 2454.232 kb on + strand, within ABZR88_RS09870at 2454.239 kb on + strand, within ABZR88_RS09870at 2454.383 kb on - strandat 2454.666 kb on + strand, within ABZR88_RS09875at 2454.682 kb on + strand, within ABZR88_RS09875at 2454.683 kb on - strand, within ABZR88_RS09875at 2454.683 kb on - strand, within ABZR88_RS09875at 2454.686 kb on + strand, within ABZR88_RS09875at 2454.809 kb on - strand, within ABZR88_RS09875at 2454.932 kb on + strand, within ABZR88_RS09875at 2454.932 kb on + strand, within ABZR88_RS09875at 2454.952 kb on - strand, within ABZR88_RS09875at 2455.181 kb on - strand, within ABZR88_RS09875at 2455.278 kb on - strand, within ABZR88_RS09875at 2455.322 kb on + strand, within ABZR88_RS09875at 2455.345 kb on + strand, within ABZR88_RS09875at 2455.360 kb on + strand, within ABZR88_RS09875at 2455.395 kb on + strand, within ABZR88_RS09875

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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2,452,110 - +0.1
2,452,111 + -2.5
2,452,193 + ABZR88_RS09865 0.12 -0.5
2,452,253 + ABZR88_RS09865 0.20 -0.2
2,452,289 + ABZR88_RS09865 0.24 -0.7
2,452,301 - ABZR88_RS09865 0.25 -0.8
2,452,525 + ABZR88_RS09865 0.53 -0.2
2,452,664 + ABZR88_RS09865 0.70 -0.2
2,452,718 + ABZR88_RS09865 0.77 -0.7
2,452,718 + ABZR88_RS09865 0.77 +1.1
2,452,781 - ABZR88_RS09865 0.85 -0.3
2,452,910 + -1.0
2,452,911 - -0.9
2,452,946 + +0.2
2,453,004 + +0.1
2,453,005 - -0.6
2,453,009 + +0.1
2,453,009 + +0.3
2,453,010 - -0.1
2,453,073 + -0.2
2,453,744 - ABZR88_RS09870 0.53 +0.5
2,453,829 + ABZR88_RS09870 0.59 +0.1
2,453,974 - ABZR88_RS09870 0.69 +1.1
2,454,087 - ABZR88_RS09870 0.77 -2.5
2,454,232 + ABZR88_RS09870 0.88 -0.9
2,454,239 + ABZR88_RS09870 0.88 -1.0
2,454,383 - -0.8
2,454,666 + ABZR88_RS09875 0.13 +0.7
2,454,682 + ABZR88_RS09875 0.14 +2.7
2,454,683 - ABZR88_RS09875 0.14 +0.7
2,454,683 - ABZR88_RS09875 0.14 -0.3
2,454,686 + ABZR88_RS09875 0.15 -0.3
2,454,809 - ABZR88_RS09875 0.26 -0.6
2,454,932 + ABZR88_RS09875 0.37 +0.7
2,454,932 + ABZR88_RS09875 0.37 -0.1
2,454,952 - ABZR88_RS09875 0.39 -0.1
2,455,181 - ABZR88_RS09875 0.59 -0.0
2,455,278 - ABZR88_RS09875 0.68 +0.1
2,455,322 + ABZR88_RS09875 0.72 -0.0
2,455,345 + ABZR88_RS09875 0.74 +0.9
2,455,360 + ABZR88_RS09875 0.76 +0.5
2,455,395 + ABZR88_RS09875 0.79 +0.0

Or see this region's nucleotide sequence