Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS09860 and ABZR88_RS09865 are separated by 2 nucleotides ABZR88_RS09865 and ABZR88_RS09870 are separated by 116 nucleotides ABZR88_RS09870 and ABZR88_RS09875 are separated by 128 nucleotides
ABZR88_RS09860: ABZR88_RS09860 - acetylglutamate kinase, at 2,451,298 to 2,452,092
_RS09860
ABZR88_RS09865: ABZR88_RS09865 - pyrroline-5-carboxylate reductase, at 2,452,095 to 2,452,904
_RS09865
ABZR88_RS09870: ABZR88_RS09870 - aspartate kinase, at 2,453,021 to 2,454,397
_RS09870
ABZR88_RS09875: ABZR88_RS09875 - DNA topoisomerase IB, at 2,454,526 to 2,455,626
_RS09875
Position (kb)
2453
2454
2455 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2452.110 kb on - strand at 2452.111 kb on + strand at 2452.193 kb on + strand, within ABZR88_RS09865 at 2452.253 kb on + strand, within ABZR88_RS09865 at 2452.289 kb on + strand, within ABZR88_RS09865 at 2452.301 kb on - strand, within ABZR88_RS09865 at 2452.525 kb on + strand, within ABZR88_RS09865 at 2452.664 kb on + strand, within ABZR88_RS09865 at 2452.718 kb on + strand, within ABZR88_RS09865 at 2452.718 kb on + strand, within ABZR88_RS09865 at 2452.781 kb on - strand, within ABZR88_RS09865 at 2452.910 kb on + strand at 2452.911 kb on - strand at 2452.946 kb on + strand at 2453.004 kb on + strand at 2453.005 kb on - strand at 2453.009 kb on + strand at 2453.009 kb on + strand at 2453.010 kb on - strand at 2453.073 kb on + strand at 2453.744 kb on - strand, within ABZR88_RS09870 at 2453.829 kb on + strand, within ABZR88_RS09870 at 2453.974 kb on - strand, within ABZR88_RS09870 at 2454.087 kb on - strand, within ABZR88_RS09870 at 2454.232 kb on + strand, within ABZR88_RS09870 at 2454.239 kb on + strand, within ABZR88_RS09870 at 2454.383 kb on - strand at 2454.666 kb on + strand, within ABZR88_RS09875 at 2454.682 kb on + strand, within ABZR88_RS09875 at 2454.683 kb on - strand, within ABZR88_RS09875 at 2454.683 kb on - strand, within ABZR88_RS09875 at 2454.686 kb on + strand, within ABZR88_RS09875 at 2454.809 kb on - strand, within ABZR88_RS09875 at 2454.932 kb on + strand, within ABZR88_RS09875 at 2454.932 kb on + strand, within ABZR88_RS09875 at 2454.952 kb on - strand, within ABZR88_RS09875 at 2455.181 kb on - strand, within ABZR88_RS09875 at 2455.278 kb on - strand, within ABZR88_RS09875 at 2455.322 kb on + strand, within ABZR88_RS09875 at 2455.345 kb on + strand, within ABZR88_RS09875 at 2455.360 kb on + strand, within ABZR88_RS09875 at 2455.395 kb on + strand, within ABZR88_RS09875
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 2,452,110 - +0.1 2,452,111 + -2.5 2,452,193 + ABZR88_RS09865 0.12 -0.5 2,452,253 + ABZR88_RS09865 0.20 -0.2 2,452,289 + ABZR88_RS09865 0.24 -0.7 2,452,301 - ABZR88_RS09865 0.25 -0.8 2,452,525 + ABZR88_RS09865 0.53 -0.2 2,452,664 + ABZR88_RS09865 0.70 -0.2 2,452,718 + ABZR88_RS09865 0.77 -0.7 2,452,718 + ABZR88_RS09865 0.77 +1.1 2,452,781 - ABZR88_RS09865 0.85 -0.3 2,452,910 + -1.0 2,452,911 - -0.9 2,452,946 + +0.2 2,453,004 + +0.1 2,453,005 - -0.6 2,453,009 + +0.1 2,453,009 + +0.3 2,453,010 - -0.1 2,453,073 + -0.2 2,453,744 - ABZR88_RS09870 0.53 +0.5 2,453,829 + ABZR88_RS09870 0.59 +0.1 2,453,974 - ABZR88_RS09870 0.69 +1.1 2,454,087 - ABZR88_RS09870 0.77 -2.5 2,454,232 + ABZR88_RS09870 0.88 -0.9 2,454,239 + ABZR88_RS09870 0.88 -1.0 2,454,383 - -0.8 2,454,666 + ABZR88_RS09875 0.13 +0.7 2,454,682 + ABZR88_RS09875 0.14 +2.7 2,454,683 - ABZR88_RS09875 0.14 +0.7 2,454,683 - ABZR88_RS09875 0.14 -0.3 2,454,686 + ABZR88_RS09875 0.15 -0.3 2,454,809 - ABZR88_RS09875 0.26 -0.6 2,454,932 + ABZR88_RS09875 0.37 +0.7 2,454,932 + ABZR88_RS09875 0.37 -0.1 2,454,952 - ABZR88_RS09875 0.39 -0.1 2,455,181 - ABZR88_RS09875 0.59 -0.0 2,455,278 - ABZR88_RS09875 0.68 +0.1 2,455,322 + ABZR88_RS09875 0.72 -0.0 2,455,345 + ABZR88_RS09875 0.74 +0.9 2,455,360 + ABZR88_RS09875 0.76 +0.5 2,455,395 + ABZR88_RS09875 0.79 +0.0
Or see this region's nucleotide sequence