Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS09825

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS09815 and ABZR88_RS09820 are separated by 81 nucleotidesABZR88_RS09820 and ABZR88_RS09825 overlap by 4 nucleotidesABZR88_RS09825 and ABZR88_RS09830 are separated by 357 nucleotides ABZR88_RS09815: ABZR88_RS09815 - GAF domain-containing protein, at 2,442,259 to 2,442,738 _RS09815 ABZR88_RS09820: ABZR88_RS09820 - DUF3291 domain-containing protein, at 2,442,820 to 2,443,530 _RS09820 ABZR88_RS09825: ABZR88_RS09825 - hypothetical protein, at 2,443,527 to 2,443,775 _RS09825 ABZR88_RS09830: ABZR88_RS09830 - diphthine--ammonia ligase, at 2,444,133 to 2,444,858 _RS09830 Position (kb) 2443 2444Strain fitness (log2 ratio) -1 0 1at 2442.621 kb on + strand, within ABZR88_RS09815at 2442.622 kb on - strand, within ABZR88_RS09815at 2442.888 kb on + strandat 2442.888 kb on + strandat 2443.168 kb on + strand, within ABZR88_RS09820at 2443.281 kb on + strand, within ABZR88_RS09820at 2443.318 kb on - strand, within ABZR88_RS09820at 2443.318 kb on - strand, within ABZR88_RS09820at 2443.398 kb on - strand, within ABZR88_RS09820at 2443.574 kb on + strand, within ABZR88_RS09825at 2443.621 kb on - strand, within ABZR88_RS09825at 2443.960 kb on - strandat 2444.146 kb on - strandat 2444.231 kb on - strand, within ABZR88_RS09830at 2444.237 kb on + strand, within ABZR88_RS09830at 2444.259 kb on - strand, within ABZR88_RS09830at 2444.452 kb on - strand, within ABZR88_RS09830at 2444.485 kb on + strand, within ABZR88_RS09830at 2444.573 kb on + strand, within ABZR88_RS09830at 2444.673 kb on - strand, within ABZR88_RS09830at 2444.764 kb on + strand, within ABZR88_RS09830at 2444.775 kb on + strand, within ABZR88_RS09830

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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2,442,621 + ABZR88_RS09815 0.75 +0.0
2,442,622 - ABZR88_RS09815 0.76 -0.3
2,442,888 + +0.1
2,442,888 + -0.3
2,443,168 + ABZR88_RS09820 0.49 +0.1
2,443,281 + ABZR88_RS09820 0.65 +0.1
2,443,318 - ABZR88_RS09820 0.70 -1.6
2,443,318 - ABZR88_RS09820 0.70 +0.5
2,443,398 - ABZR88_RS09820 0.81 -0.4
2,443,574 + ABZR88_RS09825 0.19 -0.7
2,443,621 - ABZR88_RS09825 0.38 -1.2
2,443,960 - +1.4
2,444,146 - +0.2
2,444,231 - ABZR88_RS09830 0.13 -1.7
2,444,237 + ABZR88_RS09830 0.14 -0.6
2,444,259 - ABZR88_RS09830 0.17 +0.0
2,444,452 - ABZR88_RS09830 0.44 +0.2
2,444,485 + ABZR88_RS09830 0.48 +1.0
2,444,573 + ABZR88_RS09830 0.61 +0.0
2,444,673 - ABZR88_RS09830 0.74 +0.6
2,444,764 + ABZR88_RS09830 0.87 +0.1
2,444,775 + ABZR88_RS09830 0.88 -1.6

Or see this region's nucleotide sequence