Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS09570

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS09565 and ABZR88_RS09570 are separated by 96 nucleotidesABZR88_RS09570 and ABZR88_RS09575 are separated by 4 nucleotidesABZR88_RS09575 and ABZR88_RS09580 overlap by 4 nucleotides ABZR88_RS09565: ABZR88_RS09565 - fatty acid desaturase, at 2,393,203 to 2,394,210 _RS09565 ABZR88_RS09570: ABZR88_RS09570 - glycosyltransferase family 87 protein, at 2,394,307 to 2,395,470 _RS09570 ABZR88_RS09575: ABZR88_RS09575 - glycosyltransferase family 2 protein, at 2,395,475 to 2,396,413 _RS09575 ABZR88_RS09580: ABZR88_RS09580 - polysaccharide deacetylase family protein, at 2,396,410 to 2,397,198 _RS09580 Position (kb) 2394 2395 2396Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2393.413 kb on + strand, within ABZR88_RS09565at 2393.413 kb on + strand, within ABZR88_RS09565at 2393.456 kb on + strand, within ABZR88_RS09565at 2393.571 kb on + strand, within ABZR88_RS09565at 2394.209 kb on - strandat 2394.427 kb on + strand, within ABZR88_RS09570at 2394.435 kb on + strand, within ABZR88_RS09570at 2394.441 kb on + strand, within ABZR88_RS09570at 2394.588 kb on + strand, within ABZR88_RS09570at 2394.691 kb on + strand, within ABZR88_RS09570at 2394.896 kb on + strand, within ABZR88_RS09570at 2394.897 kb on - strand, within ABZR88_RS09570at 2394.910 kb on - strand, within ABZR88_RS09570at 2394.948 kb on + strand, within ABZR88_RS09570at 2395.011 kb on + strand, within ABZR88_RS09570at 2395.045 kb on - strand, within ABZR88_RS09570at 2395.176 kb on + strand, within ABZR88_RS09570at 2395.216 kb on - strand, within ABZR88_RS09570at 2395.235 kb on + strand, within ABZR88_RS09570at 2395.360 kb on + strandat 2395.372 kb on + strandat 2395.401 kb on + strandat 2395.402 kb on - strandat 2395.403 kb on + strandat 2395.404 kb on - strandat 2395.468 kb on + strandat 2395.475 kb on - strandat 2395.498 kb on + strandat 2395.672 kb on - strand, within ABZR88_RS09575at 2395.830 kb on - strand, within ABZR88_RS09575at 2395.921 kb on + strand, within ABZR88_RS09575at 2396.097 kb on - strand, within ABZR88_RS09575at 2396.163 kb on - strand, within ABZR88_RS09575at 2396.212 kb on + strand, within ABZR88_RS09575at 2396.320 kb on + strandat 2396.376 kb on - strandat 2396.376 kb on - strandat 2396.377 kb on + strandat 2396.397 kb on + strandat 2396.421 kb on + strandat 2396.421 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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2,393,413 + ABZR88_RS09565 0.21 +1.0
2,393,413 + ABZR88_RS09565 0.21 +0.4
2,393,456 + ABZR88_RS09565 0.25 +0.1
2,393,571 + ABZR88_RS09565 0.37 +0.2
2,394,209 - -0.4
2,394,427 + ABZR88_RS09570 0.10 -0.3
2,394,435 + ABZR88_RS09570 0.11 -1.3
2,394,441 + ABZR88_RS09570 0.12 -1.3
2,394,588 + ABZR88_RS09570 0.24 -0.2
2,394,691 + ABZR88_RS09570 0.33 -1.1
2,394,896 + ABZR88_RS09570 0.51 -0.6
2,394,897 - ABZR88_RS09570 0.51 -1.1
2,394,910 - ABZR88_RS09570 0.52 +0.1
2,394,948 + ABZR88_RS09570 0.55 -0.6
2,395,011 + ABZR88_RS09570 0.60 -1.4
2,395,045 - ABZR88_RS09570 0.63 -0.5
2,395,176 + ABZR88_RS09570 0.75 -0.1
2,395,216 - ABZR88_RS09570 0.78 -1.5
2,395,235 + ABZR88_RS09570 0.80 -2.1
2,395,360 + -2.2
2,395,372 + +2.1
2,395,401 + -1.0
2,395,402 - -2.0
2,395,403 + -0.8
2,395,404 - -1.2
2,395,468 + -1.5
2,395,475 - -1.5
2,395,498 + -2.7
2,395,672 - ABZR88_RS09575 0.21 -1.3
2,395,830 - ABZR88_RS09575 0.38 -1.4
2,395,921 + ABZR88_RS09575 0.47 -1.2
2,396,097 - ABZR88_RS09575 0.66 -1.2
2,396,163 - ABZR88_RS09575 0.73 -2.2
2,396,212 + ABZR88_RS09575 0.78 -3.4
2,396,320 + -2.0
2,396,376 - -2.3
2,396,376 - -2.1
2,396,377 + -1.6
2,396,397 + +0.5
2,396,421 + -2.2
2,396,421 + -0.6

Or see this region's nucleotide sequence