Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS09565 and ABZR88_RS09570 are separated by 96 nucleotides ABZR88_RS09570 and ABZR88_RS09575 are separated by 4 nucleotides ABZR88_RS09575 and ABZR88_RS09580 overlap by 4 nucleotides
ABZR88_RS09565: ABZR88_RS09565 - fatty acid desaturase, at 2,393,203 to 2,394,210
_RS09565
ABZR88_RS09570: ABZR88_RS09570 - glycosyltransferase family 87 protein, at 2,394,307 to 2,395,470
_RS09570
ABZR88_RS09575: ABZR88_RS09575 - glycosyltransferase family 2 protein, at 2,395,475 to 2,396,413
_RS09575
ABZR88_RS09580: ABZR88_RS09580 - polysaccharide deacetylase family protein, at 2,396,410 to 2,397,198
_RS09580
Position (kb)
2394
2395
2396 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2393.413 kb on + strand, within ABZR88_RS09565 at 2393.413 kb on + strand, within ABZR88_RS09565 at 2393.456 kb on + strand, within ABZR88_RS09565 at 2393.571 kb on + strand, within ABZR88_RS09565 at 2394.209 kb on - strand at 2394.427 kb on + strand, within ABZR88_RS09570 at 2394.435 kb on + strand, within ABZR88_RS09570 at 2394.441 kb on + strand, within ABZR88_RS09570 at 2394.588 kb on + strand, within ABZR88_RS09570 at 2394.691 kb on + strand, within ABZR88_RS09570 at 2394.896 kb on + strand, within ABZR88_RS09570 at 2394.897 kb on - strand, within ABZR88_RS09570 at 2394.910 kb on - strand, within ABZR88_RS09570 at 2394.948 kb on + strand, within ABZR88_RS09570 at 2395.011 kb on + strand, within ABZR88_RS09570 at 2395.045 kb on - strand, within ABZR88_RS09570 at 2395.176 kb on + strand, within ABZR88_RS09570 at 2395.216 kb on - strand, within ABZR88_RS09570 at 2395.235 kb on + strand, within ABZR88_RS09570 at 2395.360 kb on + strand at 2395.372 kb on + strand at 2395.401 kb on + strand at 2395.402 kb on - strand at 2395.403 kb on + strand at 2395.404 kb on - strand at 2395.468 kb on + strand at 2395.475 kb on - strand at 2395.498 kb on + strand at 2395.672 kb on - strand, within ABZR88_RS09575 at 2395.830 kb on - strand, within ABZR88_RS09575 at 2395.921 kb on + strand, within ABZR88_RS09575 at 2396.097 kb on - strand, within ABZR88_RS09575 at 2396.163 kb on - strand, within ABZR88_RS09575 at 2396.212 kb on + strand, within ABZR88_RS09575 at 2396.320 kb on + strand at 2396.376 kb on - strand at 2396.376 kb on - strand at 2396.377 kb on + strand at 2396.397 kb on + strand at 2396.421 kb on + strand at 2396.421 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 2,393,413 + ABZR88_RS09565 0.21 +1.0 2,393,413 + ABZR88_RS09565 0.21 +0.4 2,393,456 + ABZR88_RS09565 0.25 +0.1 2,393,571 + ABZR88_RS09565 0.37 +0.2 2,394,209 - -0.4 2,394,427 + ABZR88_RS09570 0.10 -0.3 2,394,435 + ABZR88_RS09570 0.11 -1.3 2,394,441 + ABZR88_RS09570 0.12 -1.3 2,394,588 + ABZR88_RS09570 0.24 -0.2 2,394,691 + ABZR88_RS09570 0.33 -1.1 2,394,896 + ABZR88_RS09570 0.51 -0.6 2,394,897 - ABZR88_RS09570 0.51 -1.1 2,394,910 - ABZR88_RS09570 0.52 +0.1 2,394,948 + ABZR88_RS09570 0.55 -0.6 2,395,011 + ABZR88_RS09570 0.60 -1.4 2,395,045 - ABZR88_RS09570 0.63 -0.5 2,395,176 + ABZR88_RS09570 0.75 -0.1 2,395,216 - ABZR88_RS09570 0.78 -1.5 2,395,235 + ABZR88_RS09570 0.80 -2.1 2,395,360 + -2.2 2,395,372 + +2.1 2,395,401 + -1.0 2,395,402 - -2.0 2,395,403 + -0.8 2,395,404 - -1.2 2,395,468 + -1.5 2,395,475 - -1.5 2,395,498 + -2.7 2,395,672 - ABZR88_RS09575 0.21 -1.3 2,395,830 - ABZR88_RS09575 0.38 -1.4 2,395,921 + ABZR88_RS09575 0.47 -1.2 2,396,097 - ABZR88_RS09575 0.66 -1.2 2,396,163 - ABZR88_RS09575 0.73 -2.2 2,396,212 + ABZR88_RS09575 0.78 -3.4 2,396,320 + -2.0 2,396,376 - -2.3 2,396,376 - -2.1 2,396,377 + -1.6 2,396,397 + +0.5 2,396,421 + -2.2 2,396,421 + -0.6
Or see this region's nucleotide sequence