Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS09470

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS09465 and ABZR88_RS09470 are separated by 7 nucleotidesABZR88_RS09470 and ABZR88_RS09475 are separated by 76 nucleotides ABZR88_RS09465: ABZR88_RS09465 - phosphoenolpyruvate carboxylase, at 2,370,784 to 2,373,366 _RS09465 ABZR88_RS09470: ABZR88_RS09470 - ThuA domain-containing protein, at 2,373,374 to 2,374,102 _RS09470 ABZR88_RS09475: ABZR88_RS09475 - phytanoyl-CoA dioxygenase family protein, at 2,374,179 to 2,375,135 _RS09475 Position (kb) 2373 2374 2375Strain fitness (log2 ratio) -2 -1 0 1at 2372.406 kb on - strand, within ABZR88_RS09465at 2372.526 kb on + strand, within ABZR88_RS09465at 2373.243 kb on + strandat 2373.332 kb on - strandat 2373.437 kb on - strandat 2373.553 kb on + strand, within ABZR88_RS09470at 2373.554 kb on - strand, within ABZR88_RS09470at 2373.764 kb on + strand, within ABZR88_RS09470at 2373.901 kb on - strand, within ABZR88_RS09470at 2373.932 kb on + strand, within ABZR88_RS09470at 2374.165 kb on + strandat 2374.252 kb on + strandat 2374.373 kb on - strand, within ABZR88_RS09475at 2374.450 kb on + strand, within ABZR88_RS09475at 2374.467 kb on - strand, within ABZR88_RS09475at 2374.653 kb on - strand, within ABZR88_RS09475at 2374.665 kb on + strand, within ABZR88_RS09475at 2374.665 kb on + strand, within ABZR88_RS09475at 2374.689 kb on - strand, within ABZR88_RS09475at 2374.730 kb on - strand, within ABZR88_RS09475at 2374.774 kb on - strand, within ABZR88_RS09475at 2374.774 kb on - strand, within ABZR88_RS09475at 2374.858 kb on - strand, within ABZR88_RS09475at 2374.947 kb on + strand, within ABZR88_RS09475at 2375.078 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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2,372,406 - ABZR88_RS09465 0.63 -0.9
2,372,526 + ABZR88_RS09465 0.67 +0.1
2,373,243 + +0.1
2,373,332 - -1.2
2,373,437 - +0.6
2,373,553 + ABZR88_RS09470 0.25 -1.7
2,373,554 - ABZR88_RS09470 0.25 -0.9
2,373,764 + ABZR88_RS09470 0.53 +0.1
2,373,901 - ABZR88_RS09470 0.72 -0.5
2,373,932 + ABZR88_RS09470 0.77 -2.6
2,374,165 + +0.5
2,374,252 + -0.6
2,374,373 - ABZR88_RS09475 0.20 -0.3
2,374,450 + ABZR88_RS09475 0.28 +0.8
2,374,467 - ABZR88_RS09475 0.30 -0.7
2,374,653 - ABZR88_RS09475 0.50 +0.1
2,374,665 + ABZR88_RS09475 0.51 +0.6
2,374,665 + ABZR88_RS09475 0.51 +0.5
2,374,689 - ABZR88_RS09475 0.53 -0.1
2,374,730 - ABZR88_RS09475 0.58 +0.3
2,374,774 - ABZR88_RS09475 0.62 +0.6
2,374,774 - ABZR88_RS09475 0.62 -0.0
2,374,858 - ABZR88_RS09475 0.71 +0.7
2,374,947 + ABZR88_RS09475 0.80 -0.0
2,375,078 + -0.9

Or see this region's nucleotide sequence