Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS07985

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS07975 and ABZR88_RS07980 are separated by 54 nucleotidesABZR88_RS07980 and ABZR88_RS07985 are separated by 88 nucleotidesABZR88_RS07985 and ABZR88_RS07990 are separated by 190 nucleotides ABZR88_RS07975: ABZR88_RS07975 - tRNA epoxyqueuosine(34) reductase QueG, at 1,976,635 to 1,977,543 _RS07975 ABZR88_RS07980: ABZR88_RS07980 - nuclear transport factor 2 family protein, at 1,977,598 to 1,978,011 _RS07980 ABZR88_RS07985: ABZR88_RS07985 - polysaccharide deacetylase family protein, at 1,978,100 to 1,978,990 _RS07985 ABZR88_RS07990: ABZR88_RS07990 - Holliday junction branch migration DNA helicase RuvB, at 1,979,181 to 1,980,203 _RS07990 Position (kb) 1978 1979Strain fitness (log2 ratio) -2 -1 0 1at 1977.327 kb on + strand, within ABZR88_RS07975at 1977.404 kb on + strand, within ABZR88_RS07975at 1977.417 kb on - strand, within ABZR88_RS07975at 1977.546 kb on + strandat 1977.550 kb on - strandat 1977.551 kb on + strandat 1977.588 kb on + strandat 1977.667 kb on - strand, within ABZR88_RS07980at 1977.673 kb on - strand, within ABZR88_RS07980at 1977.724 kb on + strand, within ABZR88_RS07980at 1977.779 kb on + strand, within ABZR88_RS07980at 1977.784 kb on + strand, within ABZR88_RS07980at 1977.867 kb on - strand, within ABZR88_RS07980at 1977.922 kb on - strand, within ABZR88_RS07980at 1977.922 kb on - strand, within ABZR88_RS07980at 1978.080 kb on + strandat 1978.115 kb on - strandat 1978.463 kb on + strand, within ABZR88_RS07985at 1978.523 kb on + strand, within ABZR88_RS07985at 1978.661 kb on - strand, within ABZR88_RS07985at 1978.796 kb on + strand, within ABZR88_RS07985at 1979.008 kb on + strandat 1979.135 kb on - strandat 1979.138 kb on - strandat 1979.141 kb on - strandat 1979.603 kb on + strand, within ABZR88_RS07990at 1979.646 kb on - strand, within ABZR88_RS07990at 1979.654 kb on - strand, within ABZR88_RS07990at 1979.792 kb on + strand, within ABZR88_RS07990at 1979.897 kb on + strand, within ABZR88_RS07990at 1979.902 kb on - strand, within ABZR88_RS07990at 1979.904 kb on + strand, within ABZR88_RS07990

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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1,977,327 + ABZR88_RS07975 0.76 -0.2
1,977,404 + ABZR88_RS07975 0.85 +0.0
1,977,417 - ABZR88_RS07975 0.86 +0.8
1,977,546 + -1.0
1,977,550 - -0.3
1,977,551 + -0.0
1,977,588 + +1.5
1,977,667 - ABZR88_RS07980 0.17 -0.6
1,977,673 - ABZR88_RS07980 0.18 -0.5
1,977,724 + ABZR88_RS07980 0.30 -0.7
1,977,779 + ABZR88_RS07980 0.44 -1.0
1,977,784 + ABZR88_RS07980 0.45 -0.3
1,977,867 - ABZR88_RS07980 0.65 -0.2
1,977,922 - ABZR88_RS07980 0.78 -0.4
1,977,922 - ABZR88_RS07980 0.78 +0.1
1,978,080 + -0.3
1,978,115 - +0.4
1,978,463 + ABZR88_RS07985 0.41 -1.9
1,978,523 + ABZR88_RS07985 0.47 +0.1
1,978,661 - ABZR88_RS07985 0.63 -1.5
1,978,796 + ABZR88_RS07985 0.78 -1.7
1,979,008 + +0.1
1,979,135 - +0.0
1,979,138 - -1.1
1,979,141 - -0.3
1,979,603 + ABZR88_RS07990 0.41 -1.3
1,979,646 - ABZR88_RS07990 0.45 +0.2
1,979,654 - ABZR88_RS07990 0.46 -1.2
1,979,792 + ABZR88_RS07990 0.60 -1.2
1,979,897 + ABZR88_RS07990 0.70 +0.1
1,979,902 - ABZR88_RS07990 0.70 +0.1
1,979,904 + ABZR88_RS07990 0.71 -0.2

Or see this region's nucleotide sequence