Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS07975 and ABZR88_RS07980 are separated by 54 nucleotides ABZR88_RS07980 and ABZR88_RS07985 are separated by 88 nucleotides ABZR88_RS07985 and ABZR88_RS07990 are separated by 190 nucleotides
ABZR88_RS07975: ABZR88_RS07975 - tRNA epoxyqueuosine(34) reductase QueG, at 1,976,635 to 1,977,543
_RS07975
ABZR88_RS07980: ABZR88_RS07980 - nuclear transport factor 2 family protein, at 1,977,598 to 1,978,011
_RS07980
ABZR88_RS07985: ABZR88_RS07985 - polysaccharide deacetylase family protein, at 1,978,100 to 1,978,990
_RS07985
ABZR88_RS07990: ABZR88_RS07990 - Holliday junction branch migration DNA helicase RuvB, at 1,979,181 to 1,980,203
_RS07990
Position (kb)
1978
1979 Strain fitness (log2 ratio)
-2
-1
0
1 at 1977.327 kb on + strand, within ABZR88_RS07975 at 1977.404 kb on + strand, within ABZR88_RS07975 at 1977.417 kb on - strand, within ABZR88_RS07975 at 1977.546 kb on + strand at 1977.550 kb on - strand at 1977.551 kb on + strand at 1977.588 kb on + strand at 1977.667 kb on - strand, within ABZR88_RS07980 at 1977.673 kb on - strand, within ABZR88_RS07980 at 1977.724 kb on + strand, within ABZR88_RS07980 at 1977.779 kb on + strand, within ABZR88_RS07980 at 1977.784 kb on + strand, within ABZR88_RS07980 at 1977.867 kb on - strand, within ABZR88_RS07980 at 1977.922 kb on - strand, within ABZR88_RS07980 at 1977.922 kb on - strand, within ABZR88_RS07980 at 1978.080 kb on + strand at 1978.115 kb on - strand at 1978.463 kb on + strand, within ABZR88_RS07985 at 1978.523 kb on + strand, within ABZR88_RS07985 at 1978.661 kb on - strand, within ABZR88_RS07985 at 1978.796 kb on + strand, within ABZR88_RS07985 at 1979.008 kb on + strand at 1979.135 kb on - strand at 1979.138 kb on - strand at 1979.141 kb on - strand at 1979.603 kb on + strand, within ABZR88_RS07990 at 1979.646 kb on - strand, within ABZR88_RS07990 at 1979.654 kb on - strand, within ABZR88_RS07990 at 1979.792 kb on + strand, within ABZR88_RS07990 at 1979.897 kb on + strand, within ABZR88_RS07990 at 1979.902 kb on - strand, within ABZR88_RS07990 at 1979.904 kb on + strand, within ABZR88_RS07990
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 1,977,327 + ABZR88_RS07975 0.76 -0.2 1,977,404 + ABZR88_RS07975 0.85 +0.0 1,977,417 - ABZR88_RS07975 0.86 +0.8 1,977,546 + -1.0 1,977,550 - -0.3 1,977,551 + -0.0 1,977,588 + +1.5 1,977,667 - ABZR88_RS07980 0.17 -0.6 1,977,673 - ABZR88_RS07980 0.18 -0.5 1,977,724 + ABZR88_RS07980 0.30 -0.7 1,977,779 + ABZR88_RS07980 0.44 -1.0 1,977,784 + ABZR88_RS07980 0.45 -0.3 1,977,867 - ABZR88_RS07980 0.65 -0.2 1,977,922 - ABZR88_RS07980 0.78 -0.4 1,977,922 - ABZR88_RS07980 0.78 +0.1 1,978,080 + -0.3 1,978,115 - +0.4 1,978,463 + ABZR88_RS07985 0.41 -1.9 1,978,523 + ABZR88_RS07985 0.47 +0.1 1,978,661 - ABZR88_RS07985 0.63 -1.5 1,978,796 + ABZR88_RS07985 0.78 -1.7 1,979,008 + +0.1 1,979,135 - +0.0 1,979,138 - -1.1 1,979,141 - -0.3 1,979,603 + ABZR88_RS07990 0.41 -1.3 1,979,646 - ABZR88_RS07990 0.45 +0.2 1,979,654 - ABZR88_RS07990 0.46 -1.2 1,979,792 + ABZR88_RS07990 0.60 -1.2 1,979,897 + ABZR88_RS07990 0.70 +0.1 1,979,902 - ABZR88_RS07990 0.70 +0.1 1,979,904 + ABZR88_RS07990 0.71 -0.2
Or see this region's nucleotide sequence