Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS07690 and ABZR88_RS07695 are separated by 163 nucleotides ABZR88_RS07695 and ABZR88_RS07700 are separated by 136 nucleotides ABZR88_RS07700 and ABZR88_RS07705 are separated by 178 nucleotides ABZR88_RS07705 and ABZR88_RS07710 are separated by 92 nucleotides
ABZR88_RS07690: ABZR88_RS07690 - 50S ribosomal protein L21, at 1,925,896 to 1,926,204
_RS07690
ABZR88_RS07695: ABZR88_RS07695 - hypothetical protein, at 1,926,368 to 1,926,886
_RS07695
ABZR88_RS07700: ABZR88_RS07700 - dicarboxylate/amino acid:cation symporter, at 1,927,023 to 1,928,423
_RS07700
ABZR88_RS07705: ABZR88_RS07705 - YbjQ family protein, at 1,928,602 to 1,928,922
_RS07705
ABZR88_RS07710: ABZR88_RS07710 - hypothetical protein, at 1,929,015 to 1,929,542
_RS07710
Position (kb)
1927
1928
1929 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1926.317 kb on + strand at 1926.370 kb on - strand at 1926.501 kb on + strand, within ABZR88_RS07695 at 1926.752 kb on + strand, within ABZR88_RS07695 at 1926.875 kb on + strand at 1926.875 kb on + strand at 1926.932 kb on - strand at 1927.014 kb on - strand at 1927.149 kb on + strand at 1927.267 kb on - strand, within ABZR88_RS07700 at 1927.313 kb on - strand, within ABZR88_RS07700 at 1927.349 kb on - strand, within ABZR88_RS07700 at 1927.695 kb on + strand, within ABZR88_RS07700 at 1927.699 kb on + strand, within ABZR88_RS07700 at 1927.873 kb on - strand, within ABZR88_RS07700 at 1927.965 kb on + strand, within ABZR88_RS07700 at 1927.986 kb on + strand, within ABZR88_RS07700 at 1928.096 kb on + strand, within ABZR88_RS07700 at 1928.101 kb on - strand, within ABZR88_RS07700 at 1928.101 kb on - strand, within ABZR88_RS07700 at 1928.123 kb on + strand, within ABZR88_RS07700 at 1928.330 kb on - strand at 1928.338 kb on - strand at 1928.341 kb on - strand at 1928.373 kb on - strand at 1928.562 kb on - strand at 1928.679 kb on - strand, within ABZR88_RS07705 at 1928.738 kb on + strand, within ABZR88_RS07705 at 1928.863 kb on + strand, within ABZR88_RS07705 at 1928.889 kb on - strand, within ABZR88_RS07705 at 1928.928 kb on - strand at 1928.971 kb on + strand at 1929.007 kb on - strand at 1929.013 kb on - strand at 1929.013 kb on - strand at 1929.142 kb on - strand, within ABZR88_RS07710 at 1929.188 kb on + strand, within ABZR88_RS07710 at 1929.278 kb on + strand, within ABZR88_RS07710 at 1929.341 kb on + strand, within ABZR88_RS07710 at 1929.390 kb on - strand, within ABZR88_RS07710
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 1,926,317 + -0.1 1,926,370 - -0.1 1,926,501 + ABZR88_RS07695 0.26 -0.4 1,926,752 + ABZR88_RS07695 0.74 -0.2 1,926,875 + -1.5 1,926,875 + -1.1 1,926,932 - -0.7 1,927,014 - -0.7 1,927,149 + -2.4 1,927,267 - ABZR88_RS07700 0.17 -0.6 1,927,313 - ABZR88_RS07700 0.21 +0.1 1,927,349 - ABZR88_RS07700 0.23 -2.2 1,927,695 + ABZR88_RS07700 0.48 -1.0 1,927,699 + ABZR88_RS07700 0.48 -0.4 1,927,873 - ABZR88_RS07700 0.61 -2.7 1,927,965 + ABZR88_RS07700 0.67 -0.9 1,927,986 + ABZR88_RS07700 0.69 -0.7 1,928,096 + ABZR88_RS07700 0.77 -1.6 1,928,101 - ABZR88_RS07700 0.77 -1.2 1,928,101 - ABZR88_RS07700 0.77 -2.0 1,928,123 + ABZR88_RS07700 0.79 -0.8 1,928,330 - -1.1 1,928,338 - -1.0 1,928,341 - -1.7 1,928,373 - -2.9 1,928,562 - +0.1 1,928,679 - ABZR88_RS07705 0.24 -0.1 1,928,738 + ABZR88_RS07705 0.42 -0.5 1,928,863 + ABZR88_RS07705 0.81 -1.2 1,928,889 - ABZR88_RS07705 0.89 -0.2 1,928,928 - -0.3 1,928,971 + +0.1 1,929,007 - -0.9 1,929,013 - -0.9 1,929,013 - -0.7 1,929,142 - ABZR88_RS07710 0.24 -0.1 1,929,188 + ABZR88_RS07710 0.33 +0.2 1,929,278 + ABZR88_RS07710 0.50 -0.4 1,929,341 + ABZR88_RS07710 0.62 -0.6 1,929,390 - ABZR88_RS07710 0.71 -0.3
Or see this region's nucleotide sequence