Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS07700

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS07690 and ABZR88_RS07695 are separated by 163 nucleotidesABZR88_RS07695 and ABZR88_RS07700 are separated by 136 nucleotidesABZR88_RS07700 and ABZR88_RS07705 are separated by 178 nucleotidesABZR88_RS07705 and ABZR88_RS07710 are separated by 92 nucleotides ABZR88_RS07690: ABZR88_RS07690 - 50S ribosomal protein L21, at 1,925,896 to 1,926,204 _RS07690 ABZR88_RS07695: ABZR88_RS07695 - hypothetical protein, at 1,926,368 to 1,926,886 _RS07695 ABZR88_RS07700: ABZR88_RS07700 - dicarboxylate/amino acid:cation symporter, at 1,927,023 to 1,928,423 _RS07700 ABZR88_RS07705: ABZR88_RS07705 - YbjQ family protein, at 1,928,602 to 1,928,922 _RS07705 ABZR88_RS07710: ABZR88_RS07710 - hypothetical protein, at 1,929,015 to 1,929,542 _RS07710 Position (kb) 1927 1928 1929Strain fitness (log2 ratio) -3 -2 -1 0 1at 1926.317 kb on + strandat 1926.370 kb on - strandat 1926.501 kb on + strand, within ABZR88_RS07695at 1926.752 kb on + strand, within ABZR88_RS07695at 1926.875 kb on + strandat 1926.875 kb on + strandat 1926.932 kb on - strandat 1927.014 kb on - strandat 1927.149 kb on + strandat 1927.267 kb on - strand, within ABZR88_RS07700at 1927.313 kb on - strand, within ABZR88_RS07700at 1927.349 kb on - strand, within ABZR88_RS07700at 1927.695 kb on + strand, within ABZR88_RS07700at 1927.699 kb on + strand, within ABZR88_RS07700at 1927.873 kb on - strand, within ABZR88_RS07700at 1927.965 kb on + strand, within ABZR88_RS07700at 1927.986 kb on + strand, within ABZR88_RS07700at 1928.096 kb on + strand, within ABZR88_RS07700at 1928.101 kb on - strand, within ABZR88_RS07700at 1928.101 kb on - strand, within ABZR88_RS07700at 1928.123 kb on + strand, within ABZR88_RS07700at 1928.330 kb on - strandat 1928.338 kb on - strandat 1928.341 kb on - strandat 1928.373 kb on - strandat 1928.562 kb on - strandat 1928.679 kb on - strand, within ABZR88_RS07705at 1928.738 kb on + strand, within ABZR88_RS07705at 1928.863 kb on + strand, within ABZR88_RS07705at 1928.889 kb on - strand, within ABZR88_RS07705at 1928.928 kb on - strandat 1928.971 kb on + strandat 1929.007 kb on - strandat 1929.013 kb on - strandat 1929.013 kb on - strandat 1929.142 kb on - strand, within ABZR88_RS07710at 1929.188 kb on + strand, within ABZR88_RS07710at 1929.278 kb on + strand, within ABZR88_RS07710at 1929.341 kb on + strand, within ABZR88_RS07710at 1929.390 kb on - strand, within ABZR88_RS07710

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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1,926,317 + -0.1
1,926,370 - -0.1
1,926,501 + ABZR88_RS07695 0.26 -0.4
1,926,752 + ABZR88_RS07695 0.74 -0.2
1,926,875 + -1.5
1,926,875 + -1.1
1,926,932 - -0.7
1,927,014 - -0.7
1,927,149 + -2.4
1,927,267 - ABZR88_RS07700 0.17 -0.6
1,927,313 - ABZR88_RS07700 0.21 +0.1
1,927,349 - ABZR88_RS07700 0.23 -2.2
1,927,695 + ABZR88_RS07700 0.48 -1.0
1,927,699 + ABZR88_RS07700 0.48 -0.4
1,927,873 - ABZR88_RS07700 0.61 -2.7
1,927,965 + ABZR88_RS07700 0.67 -0.9
1,927,986 + ABZR88_RS07700 0.69 -0.7
1,928,096 + ABZR88_RS07700 0.77 -1.6
1,928,101 - ABZR88_RS07700 0.77 -1.2
1,928,101 - ABZR88_RS07700 0.77 -2.0
1,928,123 + ABZR88_RS07700 0.79 -0.8
1,928,330 - -1.1
1,928,338 - -1.0
1,928,341 - -1.7
1,928,373 - -2.9
1,928,562 - +0.1
1,928,679 - ABZR88_RS07705 0.24 -0.1
1,928,738 + ABZR88_RS07705 0.42 -0.5
1,928,863 + ABZR88_RS07705 0.81 -1.2
1,928,889 - ABZR88_RS07705 0.89 -0.2
1,928,928 - -0.3
1,928,971 + +0.1
1,929,007 - -0.9
1,929,013 - -0.9
1,929,013 - -0.7
1,929,142 - ABZR88_RS07710 0.24 -0.1
1,929,188 + ABZR88_RS07710 0.33 +0.2
1,929,278 + ABZR88_RS07710 0.50 -0.4
1,929,341 + ABZR88_RS07710 0.62 -0.6
1,929,390 - ABZR88_RS07710 0.71 -0.3

Or see this region's nucleotide sequence