Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS07660 and ABZR88_RS07665 are separated by 9 nucleotides ABZR88_RS07665 and ABZR88_RS07670 are separated by 73 nucleotides ABZR88_RS07670 and ABZR88_RS07675 are separated by 210 nucleotides
ABZR88_RS07660: ABZR88_RS07660 - hypothetical protein, at 1,920,757 to 1,921,089
_RS07660
ABZR88_RS07665: ABZR88_RS07665 - PhzF family phenazine biosynthesis protein, at 1,921,099 to 1,921,884
_RS07665
ABZR88_RS07670: ABZR88_RS07670 - HdeD family acid-resistance protein, at 1,921,958 to 1,922,476
_RS07670
ABZR88_RS07675: ABZR88_RS07675 - arginine decarboxylase, at 1,922,687 to 1,924,081
_RS07675
Position (kb) 1921
1922
1923 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1921.001 kb on - strand, within ABZR88_RS07660 at 1921.089 kb on + strand at 1921.122 kb on + strand at 1921.414 kb on - strand, within ABZR88_RS07665 at 1921.622 kb on + strand, within ABZR88_RS07665 at 1921.638 kb on - strand, within ABZR88_RS07665 at 1921.639 kb on + strand, within ABZR88_RS07665 at 1921.645 kb on - strand, within ABZR88_RS07665 at 1921.709 kb on - strand, within ABZR88_RS07665 at 1921.872 kb on + strand at 1921.872 kb on + strand at 1921.981 kb on + strand at 1921.985 kb on - strand at 1922.246 kb on + strand, within ABZR88_RS07670 at 1922.247 kb on - strand, within ABZR88_RS07670 at 1922.320 kb on + strand, within ABZR88_RS07670 at 1922.363 kb on + strand, within ABZR88_RS07670 at 1922.419 kb on + strand, within ABZR88_RS07670 at 1922.451 kb on - strand at 1922.539 kb on - strand at 1922.610 kb on - strand at 1922.657 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 1,921,001 - ABZR88_RS07660 0.73 -0.2 1,921,089 + +0.3 1,921,122 + -1.0 1,921,414 - ABZR88_RS07665 0.40 -0.4 1,921,622 + ABZR88_RS07665 0.67 -0.3 1,921,638 - ABZR88_RS07665 0.69 -0.1 1,921,639 + ABZR88_RS07665 0.69 +0.3 1,921,645 - ABZR88_RS07665 0.69 -2.0 1,921,709 - ABZR88_RS07665 0.78 +0.3 1,921,872 + -0.0 1,921,872 + +0.0 1,921,981 + -0.9 1,921,985 - -0.5 1,922,246 + ABZR88_RS07670 0.55 -0.6 1,922,247 - ABZR88_RS07670 0.56 -2.5 1,922,320 + ABZR88_RS07670 0.70 +0.2 1,922,363 + ABZR88_RS07670 0.78 -0.9 1,922,419 + ABZR88_RS07670 0.89 -1.0 1,922,451 - -0.8 1,922,539 - -0.4 1,922,610 - +3.2 1,922,657 - -1.2
Or see this region's nucleotide sequence