Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS07425

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS07415 and ABZR88_RS07420 are separated by 4 nucleotidesABZR88_RS07420 and ABZR88_RS07425 are separated by 83 nucleotidesABZR88_RS07425 and ABZR88_RS07430 are separated by 379 nucleotides ABZR88_RS07415: ABZR88_RS07415 - GNAT family N-acetyltransferase, at 1,855,521 to 1,856,006 _RS07415 ABZR88_RS07420: ABZR88_RS07420 - thioredoxin family protein, at 1,856,011 to 1,856,574 _RS07420 ABZR88_RS07425: ABZR88_RS07425 - TlpA disulfide reductase family protein, at 1,856,658 to 1,857,254 _RS07425 ABZR88_RS07430: ABZR88_RS07430 - chloride channel protein, at 1,857,634 to 1,858,929 _RS07430 Position (kb) 1856 1857 1858Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1855.761 kb on + strand, within ABZR88_RS07415at 1855.838 kb on - strand, within ABZR88_RS07415at 1856.078 kb on + strand, within ABZR88_RS07420at 1856.078 kb on + strand, within ABZR88_RS07420at 1856.278 kb on + strand, within ABZR88_RS07420at 1856.373 kb on + strand, within ABZR88_RS07420at 1856.394 kb on + strand, within ABZR88_RS07420at 1856.579 kb on + strandat 1856.580 kb on - strandat 1856.580 kb on - strandat 1856.601 kb on + strandat 1856.670 kb on - strandat 1856.759 kb on + strand, within ABZR88_RS07425at 1856.766 kb on - strand, within ABZR88_RS07425at 1857.194 kb on + strand, within ABZR88_RS07425at 1857.279 kb on - strandat 1857.294 kb on + strandat 1857.344 kb on - strandat 1857.489 kb on + strandat 1857.489 kb on + strandat 1857.490 kb on - strandat 1857.868 kb on + strand, within ABZR88_RS07430at 1858.029 kb on + strand, within ABZR88_RS07430at 1858.097 kb on + strand, within ABZR88_RS07430at 1858.138 kb on - strand, within ABZR88_RS07430at 1858.138 kb on - strand, within ABZR88_RS07430at 1858.210 kb on - strand, within ABZR88_RS07430

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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1,855,761 + ABZR88_RS07415 0.49 -0.0
1,855,838 - ABZR88_RS07415 0.65 +1.2
1,856,078 + ABZR88_RS07420 0.12 -0.0
1,856,078 + ABZR88_RS07420 0.12 -0.5
1,856,278 + ABZR88_RS07420 0.47 -0.2
1,856,373 + ABZR88_RS07420 0.64 +0.3
1,856,394 + ABZR88_RS07420 0.68 +0.2
1,856,579 + -2.9
1,856,580 - +2.8
1,856,580 - -0.1
1,856,601 + -1.2
1,856,670 - +0.0
1,856,759 + ABZR88_RS07425 0.17 -0.9
1,856,766 - ABZR88_RS07425 0.18 -2.9
1,857,194 + ABZR88_RS07425 0.90 -0.6
1,857,279 - +0.1
1,857,294 + -0.8
1,857,344 - +0.0
1,857,489 + +0.2
1,857,489 + -0.0
1,857,490 - +0.1
1,857,868 + ABZR88_RS07430 0.18 +0.4
1,858,029 + ABZR88_RS07430 0.30 -0.2
1,858,097 + ABZR88_RS07430 0.36 +0.3
1,858,138 - ABZR88_RS07430 0.39 -0.1
1,858,138 - ABZR88_RS07430 0.39 +0.6
1,858,210 - ABZR88_RS07430 0.44 -0.5

Or see this region's nucleotide sequence