Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS07415 and ABZR88_RS07420 are separated by 4 nucleotides ABZR88_RS07420 and ABZR88_RS07425 are separated by 83 nucleotides ABZR88_RS07425 and ABZR88_RS07430 are separated by 379 nucleotides
ABZR88_RS07415: ABZR88_RS07415 - GNAT family N-acetyltransferase, at 1,855,521 to 1,856,006
_RS07415
ABZR88_RS07420: ABZR88_RS07420 - thioredoxin family protein, at 1,856,011 to 1,856,574
_RS07420
ABZR88_RS07425: ABZR88_RS07425 - TlpA disulfide reductase family protein, at 1,856,658 to 1,857,254
_RS07425
ABZR88_RS07430: ABZR88_RS07430 - chloride channel protein, at 1,857,634 to 1,858,929
_RS07430
Position (kb)
1856
1857
1858 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1855.761 kb on + strand, within ABZR88_RS07415 at 1855.838 kb on - strand, within ABZR88_RS07415 at 1856.078 kb on + strand, within ABZR88_RS07420 at 1856.078 kb on + strand, within ABZR88_RS07420 at 1856.278 kb on + strand, within ABZR88_RS07420 at 1856.373 kb on + strand, within ABZR88_RS07420 at 1856.394 kb on + strand, within ABZR88_RS07420 at 1856.579 kb on + strand at 1856.580 kb on - strand at 1856.580 kb on - strand at 1856.601 kb on + strand at 1856.670 kb on - strand at 1856.759 kb on + strand, within ABZR88_RS07425 at 1856.766 kb on - strand, within ABZR88_RS07425 at 1857.194 kb on + strand, within ABZR88_RS07425 at 1857.279 kb on - strand at 1857.294 kb on + strand at 1857.344 kb on - strand at 1857.489 kb on + strand at 1857.489 kb on + strand at 1857.490 kb on - strand at 1857.868 kb on + strand, within ABZR88_RS07430 at 1858.029 kb on + strand, within ABZR88_RS07430 at 1858.097 kb on + strand, within ABZR88_RS07430 at 1858.138 kb on - strand, within ABZR88_RS07430 at 1858.138 kb on - strand, within ABZR88_RS07430 at 1858.210 kb on - strand, within ABZR88_RS07430
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 1,855,761 + ABZR88_RS07415 0.49 -0.0 1,855,838 - ABZR88_RS07415 0.65 +1.2 1,856,078 + ABZR88_RS07420 0.12 -0.0 1,856,078 + ABZR88_RS07420 0.12 -0.5 1,856,278 + ABZR88_RS07420 0.47 -0.2 1,856,373 + ABZR88_RS07420 0.64 +0.3 1,856,394 + ABZR88_RS07420 0.68 +0.2 1,856,579 + -2.9 1,856,580 - +2.8 1,856,580 - -0.1 1,856,601 + -1.2 1,856,670 - +0.0 1,856,759 + ABZR88_RS07425 0.17 -0.9 1,856,766 - ABZR88_RS07425 0.18 -2.9 1,857,194 + ABZR88_RS07425 0.90 -0.6 1,857,279 - +0.1 1,857,294 + -0.8 1,857,344 - +0.0 1,857,489 + +0.2 1,857,489 + -0.0 1,857,490 - +0.1 1,857,868 + ABZR88_RS07430 0.18 +0.4 1,858,029 + ABZR88_RS07430 0.30 -0.2 1,858,097 + ABZR88_RS07430 0.36 +0.3 1,858,138 - ABZR88_RS07430 0.39 -0.1 1,858,138 - ABZR88_RS07430 0.39 +0.6 1,858,210 - ABZR88_RS07430 0.44 -0.5
Or see this region's nucleotide sequence