Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS06895 and ABZR88_RS06900 are separated by 75 nucleotides ABZR88_RS06900 and ABZR88_RS06905 are separated by 360 nucleotides ABZR88_RS06905 and ABZR88_RS06910 are separated by 1 nucleotides
ABZR88_RS06895: ABZR88_RS06895 - DUF4844 domain-containing protein, at 1,686,277 to 1,686,651
_RS06895
ABZR88_RS06900: ABZR88_RS06900 - HAD-IIIA family hydrolase, at 1,686,727 to 1,687,218
_RS06900
ABZR88_RS06905: ABZR88_RS06905 - glutamate synthase large subunit, at 1,687,579 to 1,692,102
_RS06905
ABZR88_RS06910: ABZR88_RS06910 - glutamate synthase subunit beta, at 1,692,104 to 1,693,576
_RS06910
Position (kb)
1687
1688
1689
1690
1691
1692
1693 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1686.692 kb on - strand at 1686.810 kb on + strand, within ABZR88_RS06900 at 1686.863 kb on + strand, within ABZR88_RS06900 at 1686.994 kb on + strand, within ABZR88_RS06900 at 1687.031 kb on + strand, within ABZR88_RS06900 at 1687.032 kb on - strand, within ABZR88_RS06900 at 1687.230 kb on + strand at 1687.286 kb on + strand at 1687.366 kb on + strand at 1687.374 kb on + strand at 1687.554 kb on + strand at 1687.665 kb on + strand at 1687.779 kb on - strand at 1687.860 kb on - strand at 1687.952 kb on + strand at 1687.974 kb on - strand at 1688.035 kb on - strand, within ABZR88_RS06905 at 1688.036 kb on + strand, within ABZR88_RS06905 at 1688.055 kb on + strand, within ABZR88_RS06905 at 1688.087 kb on - strand, within ABZR88_RS06905 at 1688.101 kb on + strand, within ABZR88_RS06905 at 1688.535 kb on - strand, within ABZR88_RS06905 at 1688.535 kb on - strand, within ABZR88_RS06905 at 1689.140 kb on - strand, within ABZR88_RS06905 at 1689.341 kb on + strand, within ABZR88_RS06905 at 1689.461 kb on + strand, within ABZR88_RS06905 at 1689.484 kb on - strand, within ABZR88_RS06905 at 1689.608 kb on + strand, within ABZR88_RS06905 at 1689.658 kb on + strand, within ABZR88_RS06905 at 1690.001 kb on - strand, within ABZR88_RS06905 at 1690.001 kb on - strand, within ABZR88_RS06905 at 1690.559 kb on + strand, within ABZR88_RS06905 at 1690.656 kb on + strand, within ABZR88_RS06905 at 1690.730 kb on + strand, within ABZR88_RS06905 at 1691.119 kb on - strand, within ABZR88_RS06905 at 1691.398 kb on - strand, within ABZR88_RS06905 at 1691.407 kb on - strand, within ABZR88_RS06905 at 1691.453 kb on + strand, within ABZR88_RS06905 at 1691.805 kb on - strand at 1691.835 kb on + strand at 1691.836 kb on - strand at 1691.969 kb on + strand at 1691.970 kb on - strand at 1692.025 kb on - strand at 1692.101 kb on - strand at 1692.178 kb on + strand at 1692.361 kb on + strand, within ABZR88_RS06910 at 1692.787 kb on + strand, within ABZR88_RS06910
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 1,686,692 - +0.4 1,686,810 + ABZR88_RS06900 0.17 +0.0 1,686,863 + ABZR88_RS06900 0.28 +0.2 1,686,994 + ABZR88_RS06900 0.54 -0.9 1,687,031 + ABZR88_RS06900 0.62 -0.1 1,687,032 - ABZR88_RS06900 0.62 -0.1 1,687,230 + -0.4 1,687,286 + -0.0 1,687,366 + +0.5 1,687,374 + -1.8 1,687,554 + +2.2 1,687,665 + -0.2 1,687,779 - -0.4 1,687,860 - -1.2 1,687,952 + -0.4 1,687,974 - +1.6 1,688,035 - ABZR88_RS06905 0.10 -0.4 1,688,036 + ABZR88_RS06905 0.10 -2.8 1,688,055 + ABZR88_RS06905 0.11 +0.0 1,688,087 - ABZR88_RS06905 0.11 -0.2 1,688,101 + ABZR88_RS06905 0.12 -1.1 1,688,535 - ABZR88_RS06905 0.21 +1.4 1,688,535 - ABZR88_RS06905 0.21 -0.5 1,689,140 - ABZR88_RS06905 0.35 -0.2 1,689,341 + ABZR88_RS06905 0.39 -1.6 1,689,461 + ABZR88_RS06905 0.42 -0.4 1,689,484 - ABZR88_RS06905 0.42 -0.6 1,689,608 + ABZR88_RS06905 0.45 -2.0 1,689,658 + ABZR88_RS06905 0.46 -2.0 1,690,001 - ABZR88_RS06905 0.54 -2.8 1,690,001 - ABZR88_RS06905 0.54 -1.5 1,690,559 + ABZR88_RS06905 0.66 -2.8 1,690,656 + ABZR88_RS06905 0.68 -1.5 1,690,730 + ABZR88_RS06905 0.70 -0.4 1,691,119 - ABZR88_RS06905 0.78 -1.0 1,691,398 - ABZR88_RS06905 0.84 -1.2 1,691,407 - ABZR88_RS06905 0.85 -0.4 1,691,453 + ABZR88_RS06905 0.86 +0.2 1,691,805 - -0.5 1,691,835 + -0.4 1,691,836 - -0.8 1,691,969 + -0.8 1,691,970 - -2.8 1,692,025 - -0.2 1,692,101 - -0.8 1,692,178 + +0.2 1,692,361 + ABZR88_RS06910 0.17 -1.6 1,692,787 + ABZR88_RS06910 0.46 -0.6
Or see this region's nucleotide sequence