Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS06905

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS06895 and ABZR88_RS06900 are separated by 75 nucleotidesABZR88_RS06900 and ABZR88_RS06905 are separated by 360 nucleotidesABZR88_RS06905 and ABZR88_RS06910 are separated by 1 nucleotides ABZR88_RS06895: ABZR88_RS06895 - DUF4844 domain-containing protein, at 1,686,277 to 1,686,651 _RS06895 ABZR88_RS06900: ABZR88_RS06900 - HAD-IIIA family hydrolase, at 1,686,727 to 1,687,218 _RS06900 ABZR88_RS06905: ABZR88_RS06905 - glutamate synthase large subunit, at 1,687,579 to 1,692,102 _RS06905 ABZR88_RS06910: ABZR88_RS06910 - glutamate synthase subunit beta, at 1,692,104 to 1,693,576 _RS06910 Position (kb) 1687 1688 1689 1690 1691 1692 1693Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1686.692 kb on - strandat 1686.810 kb on + strand, within ABZR88_RS06900at 1686.863 kb on + strand, within ABZR88_RS06900at 1686.994 kb on + strand, within ABZR88_RS06900at 1687.031 kb on + strand, within ABZR88_RS06900at 1687.032 kb on - strand, within ABZR88_RS06900at 1687.230 kb on + strandat 1687.286 kb on + strandat 1687.366 kb on + strandat 1687.374 kb on + strandat 1687.554 kb on + strandat 1687.665 kb on + strandat 1687.779 kb on - strandat 1687.860 kb on - strandat 1687.952 kb on + strandat 1687.974 kb on - strandat 1688.035 kb on - strand, within ABZR88_RS06905at 1688.036 kb on + strand, within ABZR88_RS06905at 1688.055 kb on + strand, within ABZR88_RS06905at 1688.087 kb on - strand, within ABZR88_RS06905at 1688.101 kb on + strand, within ABZR88_RS06905at 1688.535 kb on - strand, within ABZR88_RS06905at 1688.535 kb on - strand, within ABZR88_RS06905at 1689.140 kb on - strand, within ABZR88_RS06905at 1689.341 kb on + strand, within ABZR88_RS06905at 1689.461 kb on + strand, within ABZR88_RS06905at 1689.484 kb on - strand, within ABZR88_RS06905at 1689.608 kb on + strand, within ABZR88_RS06905at 1689.658 kb on + strand, within ABZR88_RS06905at 1690.001 kb on - strand, within ABZR88_RS06905at 1690.001 kb on - strand, within ABZR88_RS06905at 1690.559 kb on + strand, within ABZR88_RS06905at 1690.656 kb on + strand, within ABZR88_RS06905at 1690.730 kb on + strand, within ABZR88_RS06905at 1691.119 kb on - strand, within ABZR88_RS06905at 1691.398 kb on - strand, within ABZR88_RS06905at 1691.407 kb on - strand, within ABZR88_RS06905at 1691.453 kb on + strand, within ABZR88_RS06905at 1691.805 kb on - strandat 1691.835 kb on + strandat 1691.836 kb on - strandat 1691.969 kb on + strandat 1691.970 kb on - strandat 1692.025 kb on - strandat 1692.101 kb on - strandat 1692.178 kb on + strandat 1692.361 kb on + strand, within ABZR88_RS06910at 1692.787 kb on + strand, within ABZR88_RS06910

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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1,686,692 - +0.4
1,686,810 + ABZR88_RS06900 0.17 +0.0
1,686,863 + ABZR88_RS06900 0.28 +0.2
1,686,994 + ABZR88_RS06900 0.54 -0.9
1,687,031 + ABZR88_RS06900 0.62 -0.1
1,687,032 - ABZR88_RS06900 0.62 -0.1
1,687,230 + -0.4
1,687,286 + -0.0
1,687,366 + +0.5
1,687,374 + -1.8
1,687,554 + +2.2
1,687,665 + -0.2
1,687,779 - -0.4
1,687,860 - -1.2
1,687,952 + -0.4
1,687,974 - +1.6
1,688,035 - ABZR88_RS06905 0.10 -0.4
1,688,036 + ABZR88_RS06905 0.10 -2.8
1,688,055 + ABZR88_RS06905 0.11 +0.0
1,688,087 - ABZR88_RS06905 0.11 -0.2
1,688,101 + ABZR88_RS06905 0.12 -1.1
1,688,535 - ABZR88_RS06905 0.21 +1.4
1,688,535 - ABZR88_RS06905 0.21 -0.5
1,689,140 - ABZR88_RS06905 0.35 -0.2
1,689,341 + ABZR88_RS06905 0.39 -1.6
1,689,461 + ABZR88_RS06905 0.42 -0.4
1,689,484 - ABZR88_RS06905 0.42 -0.6
1,689,608 + ABZR88_RS06905 0.45 -2.0
1,689,658 + ABZR88_RS06905 0.46 -2.0
1,690,001 - ABZR88_RS06905 0.54 -2.8
1,690,001 - ABZR88_RS06905 0.54 -1.5
1,690,559 + ABZR88_RS06905 0.66 -2.8
1,690,656 + ABZR88_RS06905 0.68 -1.5
1,690,730 + ABZR88_RS06905 0.70 -0.4
1,691,119 - ABZR88_RS06905 0.78 -1.0
1,691,398 - ABZR88_RS06905 0.84 -1.2
1,691,407 - ABZR88_RS06905 0.85 -0.4
1,691,453 + ABZR88_RS06905 0.86 +0.2
1,691,805 - -0.5
1,691,835 + -0.4
1,691,836 - -0.8
1,691,969 + -0.8
1,691,970 - -2.8
1,692,025 - -0.2
1,692,101 - -0.8
1,692,178 + +0.2
1,692,361 + ABZR88_RS06910 0.17 -1.6
1,692,787 + ABZR88_RS06910 0.46 -0.6

Or see this region's nucleotide sequence