Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS06865

Experiment: R2A motility; outer cut

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS06855 and ABZR88_RS06860 are separated by 179 nucleotidesABZR88_RS06860 and ABZR88_RS06865 are separated by 7 nucleotidesABZR88_RS06865 and ABZR88_RS06870 are separated by 101 nucleotides ABZR88_RS06855: ABZR88_RS06855 - imidazole glycerol phosphate synthase subunit HisF, at 1,677,479 to 1,678,273 _RS06855 ABZR88_RS06860: ABZR88_RS06860 - HisA/HisF-related TIM barrel protein, at 1,678,453 to 1,679,202 _RS06860 ABZR88_RS06865: ABZR88_RS06865 - imidazole glycerol phosphate synthase subunit HisH, at 1,679,210 to 1,679,800 _RS06865 ABZR88_RS06870: ABZR88_RS06870 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 1,679,902 to 1,681,053 _RS06870 Position (kb) 1679 1680Strain fitness (log2 ratio) -3 -2 -1 0 1at 1678.261 kb on + strandat 1678.262 kb on - strandat 1678.454 kb on + strandat 1678.906 kb on - strand, within ABZR88_RS06860at 1679.198 kb on + strandat 1679.248 kb on - strandat 1679.368 kb on - strand, within ABZR88_RS06865at 1679.809 kb on - strandat 1679.820 kb on + strandat 1679.884 kb on - strandat 1679.904 kb on - strandat 1680.060 kb on + strand, within ABZR88_RS06870at 1680.243 kb on + strand, within ABZR88_RS06870

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
remove
1,678,261 + -1.6
1,678,262 - -1.6
1,678,454 + +1.2
1,678,906 - ABZR88_RS06860 0.60 -2.8
1,679,198 + -2.2
1,679,248 - -0.6
1,679,368 - ABZR88_RS06865 0.27 -1.5
1,679,809 - -0.1
1,679,820 + -2.0
1,679,884 - -0.2
1,679,904 - -0.2
1,680,060 + ABZR88_RS06870 0.14 +0.6
1,680,243 + ABZR88_RS06870 0.30 -0.2

Or see this region's nucleotide sequence