Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS06855 and ABZR88_RS06860 are separated by 179 nucleotides ABZR88_RS06860 and ABZR88_RS06865 are separated by 7 nucleotides ABZR88_RS06865 and ABZR88_RS06870 are separated by 101 nucleotides
ABZR88_RS06855: ABZR88_RS06855 - imidazole glycerol phosphate synthase subunit HisF, at 1,677,479 to 1,678,273
_RS06855
ABZR88_RS06860: ABZR88_RS06860 - HisA/HisF-related TIM barrel protein, at 1,678,453 to 1,679,202
_RS06860
ABZR88_RS06865: ABZR88_RS06865 - imidazole glycerol phosphate synthase subunit HisH, at 1,679,210 to 1,679,800
_RS06865
ABZR88_RS06870: ABZR88_RS06870 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 1,679,902 to 1,681,053
_RS06870
Position (kb)
1679
1680 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1678.261 kb on + strand at 1678.262 kb on - strand at 1678.454 kb on + strand at 1678.906 kb on - strand, within ABZR88_RS06860 at 1679.198 kb on + strand at 1679.248 kb on - strand at 1679.368 kb on - strand, within ABZR88_RS06865 at 1679.809 kb on - strand at 1679.820 kb on + strand at 1679.884 kb on - strand at 1679.904 kb on - strand at 1680.060 kb on + strand, within ABZR88_RS06870 at 1680.243 kb on + strand, within ABZR88_RS06870
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 1,678,261 + -1.6 1,678,262 - -1.6 1,678,454 + +1.2 1,678,906 - ABZR88_RS06860 0.60 -2.8 1,679,198 + -2.2 1,679,248 - -0.6 1,679,368 - ABZR88_RS06865 0.27 -1.5 1,679,809 - -0.1 1,679,820 + -2.0 1,679,884 - -0.2 1,679,904 - -0.2 1,680,060 + ABZR88_RS06870 0.14 +0.6 1,680,243 + ABZR88_RS06870 0.30 -0.2
Or see this region's nucleotide sequence