Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS06850 and ABZR88_RS06855 are separated by 6 nucleotides ABZR88_RS06855 and ABZR88_RS06860 are separated by 179 nucleotides ABZR88_RS06860 and ABZR88_RS06865 are separated by 7 nucleotides
ABZR88_RS06850: ABZR88_RS06850 - hypothetical protein, at 1,675,997 to 1,677,472
_RS06850
ABZR88_RS06855: ABZR88_RS06855 - imidazole glycerol phosphate synthase subunit HisF, at 1,677,479 to 1,678,273
_RS06855
ABZR88_RS06860: ABZR88_RS06860 - HisA/HisF-related TIM barrel protein, at 1,678,453 to 1,679,202
_RS06860
ABZR88_RS06865: ABZR88_RS06865 - imidazole glycerol phosphate synthase subunit HisH, at 1,679,210 to 1,679,800
_RS06865
Position (kb)
1677
1678
1679 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1676.545 kb on + strand, within ABZR88_RS06850 at 1676.587 kb on + strand, within ABZR88_RS06850 at 1676.603 kb on + strand, within ABZR88_RS06850 at 1676.604 kb on - strand, within ABZR88_RS06850 at 1676.703 kb on - strand, within ABZR88_RS06850 at 1676.703 kb on - strand, within ABZR88_RS06850 at 1676.750 kb on + strand, within ABZR88_RS06850 at 1676.941 kb on + strand, within ABZR88_RS06850 at 1677.041 kb on - strand, within ABZR88_RS06850 at 1677.044 kb on + strand, within ABZR88_RS06850 at 1677.152 kb on + strand, within ABZR88_RS06850 at 1677.167 kb on - strand, within ABZR88_RS06850 at 1677.440 kb on + strand at 1677.484 kb on + strand at 1677.647 kb on - strand, within ABZR88_RS06855 at 1677.679 kb on + strand, within ABZR88_RS06855 at 1678.075 kb on + strand, within ABZR88_RS06855 at 1678.261 kb on + strand at 1678.262 kb on - strand at 1678.454 kb on + strand at 1678.906 kb on - strand, within ABZR88_RS06860 at 1679.198 kb on + strand at 1679.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 1,676,545 + ABZR88_RS06850 0.37 +0.2 1,676,587 + ABZR88_RS06850 0.40 -0.5 1,676,603 + ABZR88_RS06850 0.41 -0.0 1,676,604 - ABZR88_RS06850 0.41 -0.1 1,676,703 - ABZR88_RS06850 0.48 -0.4 1,676,703 - ABZR88_RS06850 0.48 -0.2 1,676,750 + ABZR88_RS06850 0.51 +0.4 1,676,941 + ABZR88_RS06850 0.64 -0.6 1,677,041 - ABZR88_RS06850 0.71 +0.8 1,677,044 + ABZR88_RS06850 0.71 -0.1 1,677,152 + ABZR88_RS06850 0.78 +0.5 1,677,167 - ABZR88_RS06850 0.79 +0.1 1,677,440 + +0.0 1,677,484 + +0.7 1,677,647 - ABZR88_RS06855 0.21 -2.0 1,677,679 + ABZR88_RS06855 0.25 -3.2 1,678,075 + ABZR88_RS06855 0.75 -1.6 1,678,261 + -1.6 1,678,262 - -1.6 1,678,454 + +1.2 1,678,906 - ABZR88_RS06860 0.60 -2.8 1,679,198 + -2.2 1,679,248 - -0.6
Or see this region's nucleotide sequence