Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS06855

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS06850 and ABZR88_RS06855 are separated by 6 nucleotidesABZR88_RS06855 and ABZR88_RS06860 are separated by 179 nucleotidesABZR88_RS06860 and ABZR88_RS06865 are separated by 7 nucleotides ABZR88_RS06850: ABZR88_RS06850 - hypothetical protein, at 1,675,997 to 1,677,472 _RS06850 ABZR88_RS06855: ABZR88_RS06855 - imidazole glycerol phosphate synthase subunit HisF, at 1,677,479 to 1,678,273 _RS06855 ABZR88_RS06860: ABZR88_RS06860 - HisA/HisF-related TIM barrel protein, at 1,678,453 to 1,679,202 _RS06860 ABZR88_RS06865: ABZR88_RS06865 - imidazole glycerol phosphate synthase subunit HisH, at 1,679,210 to 1,679,800 _RS06865 Position (kb) 1677 1678 1679Strain fitness (log2 ratio) -3 -2 -1 0 1at 1676.545 kb on + strand, within ABZR88_RS06850at 1676.587 kb on + strand, within ABZR88_RS06850at 1676.603 kb on + strand, within ABZR88_RS06850at 1676.604 kb on - strand, within ABZR88_RS06850at 1676.703 kb on - strand, within ABZR88_RS06850at 1676.703 kb on - strand, within ABZR88_RS06850at 1676.750 kb on + strand, within ABZR88_RS06850at 1676.941 kb on + strand, within ABZR88_RS06850at 1677.041 kb on - strand, within ABZR88_RS06850at 1677.044 kb on + strand, within ABZR88_RS06850at 1677.152 kb on + strand, within ABZR88_RS06850at 1677.167 kb on - strand, within ABZR88_RS06850at 1677.440 kb on + strandat 1677.484 kb on + strandat 1677.647 kb on - strand, within ABZR88_RS06855at 1677.679 kb on + strand, within ABZR88_RS06855at 1678.075 kb on + strand, within ABZR88_RS06855at 1678.261 kb on + strandat 1678.262 kb on - strandat 1678.454 kb on + strandat 1678.906 kb on - strand, within ABZR88_RS06860at 1679.198 kb on + strandat 1679.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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1,676,545 + ABZR88_RS06850 0.37 +0.2
1,676,587 + ABZR88_RS06850 0.40 -0.5
1,676,603 + ABZR88_RS06850 0.41 -0.0
1,676,604 - ABZR88_RS06850 0.41 -0.1
1,676,703 - ABZR88_RS06850 0.48 -0.4
1,676,703 - ABZR88_RS06850 0.48 -0.2
1,676,750 + ABZR88_RS06850 0.51 +0.4
1,676,941 + ABZR88_RS06850 0.64 -0.6
1,677,041 - ABZR88_RS06850 0.71 +0.8
1,677,044 + ABZR88_RS06850 0.71 -0.1
1,677,152 + ABZR88_RS06850 0.78 +0.5
1,677,167 - ABZR88_RS06850 0.79 +0.1
1,677,440 + +0.0
1,677,484 + +0.7
1,677,647 - ABZR88_RS06855 0.21 -2.0
1,677,679 + ABZR88_RS06855 0.25 -3.2
1,678,075 + ABZR88_RS06855 0.75 -1.6
1,678,261 + -1.6
1,678,262 - -1.6
1,678,454 + +1.2
1,678,906 - ABZR88_RS06860 0.60 -2.8
1,679,198 + -2.2
1,679,248 - -0.6

Or see this region's nucleotide sequence