Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS06705 and ABZR88_RS06710 are separated by 113 nucleotides ABZR88_RS06710 and ABZR88_RS06715 are separated by 17 nucleotides ABZR88_RS06715 and ABZR88_RS06720 overlap by 17 nucleotides ABZR88_RS06720 and ABZR88_RS06725 are separated by 24 nucleotides
ABZR88_RS06705: ABZR88_RS06705 - Dps family protein, at 1,646,515 to 1,646,994
_RS06705
ABZR88_RS06710: ABZR88_RS06710 - DUF4905 domain-containing protein, at 1,647,108 to 1,647,860
_RS06710
ABZR88_RS06715: ABZR88_RS06715 - LysM peptidoglycan-binding domain-containing protein, at 1,647,878 to 1,649,047
_RS06715
ABZR88_RS06720: ABZR88_RS06720 - uridine kinase, at 1,649,031 to 1,649,675
_RS06720
ABZR88_RS06725: ABZR88_RS06725 - polysaccharide lyase family 8 super-sandwich domain-containing protein, at 1,649,700 to 1,651,745
_RS06725
Position (kb) 1647
1648
1649
1650 Strain fitness (log2 ratio) -2
-1
0
1 at 1646.945 kb on - strand, within ABZR88_RS06705 at 1647.075 kb on - strand at 1647.078 kb on + strand at 1647.079 kb on - strand at 1647.085 kb on - strand at 1648.197 kb on + strand, within ABZR88_RS06715 at 1648.277 kb on - strand, within ABZR88_RS06715 at 1648.316 kb on - strand, within ABZR88_RS06715 at 1648.569 kb on + strand, within ABZR88_RS06715 at 1648.570 kb on - strand, within ABZR88_RS06715 at 1649.026 kb on + strand at 1649.161 kb on - strand, within ABZR88_RS06720 at 1649.211 kb on - strand, within ABZR88_RS06720 at 1649.385 kb on - strand, within ABZR88_RS06720 at 1649.448 kb on - strand, within ABZR88_RS06720 at 1649.592 kb on - strand, within ABZR88_RS06720 at 1649.619 kb on - strand at 1649.628 kb on - strand at 1649.673 kb on + strand at 1649.678 kb on + strand at 1649.678 kb on + strand at 1649.726 kb on - strand at 1649.763 kb on - strand at 1649.977 kb on - strand, within ABZR88_RS06725
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 1,646,945 - ABZR88_RS06705 0.90 +0.2 1,647,075 - -1.8 1,647,078 + -0.2 1,647,079 - -0.1 1,647,085 - +0.4 1,648,197 + ABZR88_RS06715 0.27 -0.4 1,648,277 - ABZR88_RS06715 0.34 -1.4 1,648,316 - ABZR88_RS06715 0.37 -1.8 1,648,569 + ABZR88_RS06715 0.59 -0.3 1,648,570 - ABZR88_RS06715 0.59 -2.1 1,649,026 + -0.0 1,649,161 - ABZR88_RS06720 0.20 -0.5 1,649,211 - ABZR88_RS06720 0.28 -0.4 1,649,385 - ABZR88_RS06720 0.55 +0.6 1,649,448 - ABZR88_RS06720 0.65 -1.0 1,649,592 - ABZR88_RS06720 0.87 -0.4 1,649,619 - -0.8 1,649,628 - +1.0 1,649,673 + +0.6 1,649,678 + +0.1 1,649,678 + -0.1 1,649,726 - -1.7 1,649,763 - -0.1 1,649,977 - ABZR88_RS06725 0.14 +0.2
Or see this region's nucleotide sequence