Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS06615 and ABZR88_RS06620 overlap by 4 nucleotides ABZR88_RS06620 and ABZR88_RS06625 are separated by 163 nucleotides ABZR88_RS06625 and ABZR88_RS06630 are separated by 25 nucleotides ABZR88_RS06630 and ABZR88_RS06635 are separated by 5 nucleotides
ABZR88_RS06615: ABZR88_RS06615 - ABC transporter ATP-binding protein, at 1,627,672 to 1,628,424
_RS06615
ABZR88_RS06620: ABZR88_RS06620 - ABC transporter permease, at 1,628,421 to 1,629,152
_RS06620
ABZR88_RS06625: ABZR88_RS06625 - SDR family oxidoreductase, at 1,629,316 to 1,630,020
_RS06625
ABZR88_RS06630: ABZR88_RS06630 - PspC domain-containing protein, at 1,630,046 to 1,630,609
_RS06630
ABZR88_RS06635: ABZR88_RS06635 - DUF5668 domain-containing protein, at 1,630,615 to 1,631,586
_RS06635
Position (kb)
1629
1630
1631 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1628.377 kb on + strand at 1628.378 kb on - strand at 1628.441 kb on + strand at 1628.559 kb on - strand, within ABZR88_RS06620 at 1628.578 kb on - strand, within ABZR88_RS06620 at 1628.578 kb on - strand, within ABZR88_RS06620 at 1628.580 kb on - strand, within ABZR88_RS06620 at 1628.580 kb on - strand, within ABZR88_RS06620 at 1628.641 kb on + strand, within ABZR88_RS06620 at 1628.820 kb on + strand, within ABZR88_RS06620 at 1629.017 kb on + strand, within ABZR88_RS06620 at 1629.017 kb on + strand, within ABZR88_RS06620 at 1629.023 kb on + strand, within ABZR88_RS06620 at 1629.082 kb on - strand at 1629.223 kb on - strand at 1629.250 kb on - strand at 1629.263 kb on + strand at 1629.769 kb on + strand, within ABZR88_RS06625 at 1629.804 kb on + strand, within ABZR88_RS06625 at 1629.805 kb on - strand, within ABZR88_RS06625 at 1629.956 kb on - strand at 1630.258 kb on + strand, within ABZR88_RS06630 at 1630.259 kb on - strand, within ABZR88_RS06630 at 1630.289 kb on + strand, within ABZR88_RS06630 at 1630.396 kb on + strand, within ABZR88_RS06630 at 1630.414 kb on + strand, within ABZR88_RS06630 at 1630.431 kb on + strand, within ABZR88_RS06630 at 1630.466 kb on - strand, within ABZR88_RS06630 at 1630.466 kb on - strand, within ABZR88_RS06630 at 1630.761 kb on + strand, within ABZR88_RS06635 at 1630.762 kb on - strand, within ABZR88_RS06635 at 1630.800 kb on - strand, within ABZR88_RS06635 at 1630.809 kb on - strand, within ABZR88_RS06635 at 1630.848 kb on + strand, within ABZR88_RS06635 at 1630.849 kb on - strand, within ABZR88_RS06635 at 1630.960 kb on - strand, within ABZR88_RS06635 at 1630.962 kb on + strand, within ABZR88_RS06635
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 1,628,377 + +2.8 1,628,378 - -0.1 1,628,441 + +0.4 1,628,559 - ABZR88_RS06620 0.19 -0.8 1,628,578 - ABZR88_RS06620 0.21 -0.1 1,628,578 - ABZR88_RS06620 0.21 +1.2 1,628,580 - ABZR88_RS06620 0.22 -0.7 1,628,580 - ABZR88_RS06620 0.22 -1.2 1,628,641 + ABZR88_RS06620 0.30 -1.4 1,628,820 + ABZR88_RS06620 0.55 -0.5 1,629,017 + ABZR88_RS06620 0.81 -0.4 1,629,017 + ABZR88_RS06620 0.81 +0.4 1,629,023 + ABZR88_RS06620 0.82 +1.7 1,629,082 - +0.5 1,629,223 - -0.6 1,629,250 - -0.0 1,629,263 + +0.1 1,629,769 + ABZR88_RS06625 0.64 -1.6 1,629,804 + ABZR88_RS06625 0.69 -0.1 1,629,805 - ABZR88_RS06625 0.69 -0.4 1,629,956 - +0.2 1,630,258 + ABZR88_RS06630 0.38 -1.1 1,630,259 - ABZR88_RS06630 0.38 -0.5 1,630,289 + ABZR88_RS06630 0.43 +0.6 1,630,396 + ABZR88_RS06630 0.62 -0.6 1,630,414 + ABZR88_RS06630 0.65 +0.1 1,630,431 + ABZR88_RS06630 0.68 -0.1 1,630,466 - ABZR88_RS06630 0.74 -0.9 1,630,466 - ABZR88_RS06630 0.74 -0.4 1,630,761 + ABZR88_RS06635 0.15 -0.4 1,630,762 - ABZR88_RS06635 0.15 -1.8 1,630,800 - ABZR88_RS06635 0.19 -0.4 1,630,809 - ABZR88_RS06635 0.20 -0.4 1,630,848 + ABZR88_RS06635 0.24 -0.7 1,630,849 - ABZR88_RS06635 0.24 -1.2 1,630,960 - ABZR88_RS06635 0.35 -0.6 1,630,962 + ABZR88_RS06635 0.36 -0.7
Or see this region's nucleotide sequence