Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS06625

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS06615 and ABZR88_RS06620 overlap by 4 nucleotidesABZR88_RS06620 and ABZR88_RS06625 are separated by 163 nucleotidesABZR88_RS06625 and ABZR88_RS06630 are separated by 25 nucleotidesABZR88_RS06630 and ABZR88_RS06635 are separated by 5 nucleotides ABZR88_RS06615: ABZR88_RS06615 - ABC transporter ATP-binding protein, at 1,627,672 to 1,628,424 _RS06615 ABZR88_RS06620: ABZR88_RS06620 - ABC transporter permease, at 1,628,421 to 1,629,152 _RS06620 ABZR88_RS06625: ABZR88_RS06625 - SDR family oxidoreductase, at 1,629,316 to 1,630,020 _RS06625 ABZR88_RS06630: ABZR88_RS06630 - PspC domain-containing protein, at 1,630,046 to 1,630,609 _RS06630 ABZR88_RS06635: ABZR88_RS06635 - DUF5668 domain-containing protein, at 1,630,615 to 1,631,586 _RS06635 Position (kb) 1629 1630 1631Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1628.377 kb on + strandat 1628.378 kb on - strandat 1628.441 kb on + strandat 1628.559 kb on - strand, within ABZR88_RS06620at 1628.578 kb on - strand, within ABZR88_RS06620at 1628.578 kb on - strand, within ABZR88_RS06620at 1628.580 kb on - strand, within ABZR88_RS06620at 1628.580 kb on - strand, within ABZR88_RS06620at 1628.641 kb on + strand, within ABZR88_RS06620at 1628.820 kb on + strand, within ABZR88_RS06620at 1629.017 kb on + strand, within ABZR88_RS06620at 1629.017 kb on + strand, within ABZR88_RS06620at 1629.023 kb on + strand, within ABZR88_RS06620at 1629.082 kb on - strandat 1629.223 kb on - strandat 1629.250 kb on - strandat 1629.263 kb on + strandat 1629.769 kb on + strand, within ABZR88_RS06625at 1629.804 kb on + strand, within ABZR88_RS06625at 1629.805 kb on - strand, within ABZR88_RS06625at 1629.956 kb on - strandat 1630.258 kb on + strand, within ABZR88_RS06630at 1630.259 kb on - strand, within ABZR88_RS06630at 1630.289 kb on + strand, within ABZR88_RS06630at 1630.396 kb on + strand, within ABZR88_RS06630at 1630.414 kb on + strand, within ABZR88_RS06630at 1630.431 kb on + strand, within ABZR88_RS06630at 1630.466 kb on - strand, within ABZR88_RS06630at 1630.466 kb on - strand, within ABZR88_RS06630at 1630.761 kb on + strand, within ABZR88_RS06635at 1630.762 kb on - strand, within ABZR88_RS06635at 1630.800 kb on - strand, within ABZR88_RS06635at 1630.809 kb on - strand, within ABZR88_RS06635at 1630.848 kb on + strand, within ABZR88_RS06635at 1630.849 kb on - strand, within ABZR88_RS06635at 1630.960 kb on - strand, within ABZR88_RS06635at 1630.962 kb on + strand, within ABZR88_RS06635

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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1,628,377 + +2.8
1,628,378 - -0.1
1,628,441 + +0.4
1,628,559 - ABZR88_RS06620 0.19 -0.8
1,628,578 - ABZR88_RS06620 0.21 -0.1
1,628,578 - ABZR88_RS06620 0.21 +1.2
1,628,580 - ABZR88_RS06620 0.22 -0.7
1,628,580 - ABZR88_RS06620 0.22 -1.2
1,628,641 + ABZR88_RS06620 0.30 -1.4
1,628,820 + ABZR88_RS06620 0.55 -0.5
1,629,017 + ABZR88_RS06620 0.81 -0.4
1,629,017 + ABZR88_RS06620 0.81 +0.4
1,629,023 + ABZR88_RS06620 0.82 +1.7
1,629,082 - +0.5
1,629,223 - -0.6
1,629,250 - -0.0
1,629,263 + +0.1
1,629,769 + ABZR88_RS06625 0.64 -1.6
1,629,804 + ABZR88_RS06625 0.69 -0.1
1,629,805 - ABZR88_RS06625 0.69 -0.4
1,629,956 - +0.2
1,630,258 + ABZR88_RS06630 0.38 -1.1
1,630,259 - ABZR88_RS06630 0.38 -0.5
1,630,289 + ABZR88_RS06630 0.43 +0.6
1,630,396 + ABZR88_RS06630 0.62 -0.6
1,630,414 + ABZR88_RS06630 0.65 +0.1
1,630,431 + ABZR88_RS06630 0.68 -0.1
1,630,466 - ABZR88_RS06630 0.74 -0.9
1,630,466 - ABZR88_RS06630 0.74 -0.4
1,630,761 + ABZR88_RS06635 0.15 -0.4
1,630,762 - ABZR88_RS06635 0.15 -1.8
1,630,800 - ABZR88_RS06635 0.19 -0.4
1,630,809 - ABZR88_RS06635 0.20 -0.4
1,630,848 + ABZR88_RS06635 0.24 -0.7
1,630,849 - ABZR88_RS06635 0.24 -1.2
1,630,960 - ABZR88_RS06635 0.35 -0.6
1,630,962 + ABZR88_RS06635 0.36 -0.7

Or see this region's nucleotide sequence