Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS06350 and ABZR88_RS06355 are separated by 2 nucleotides ABZR88_RS06355 and ABZR88_RS06360 are separated by 338 nucleotides ABZR88_RS06360 and ABZR88_RS06365 are separated by 218 nucleotides ABZR88_RS06365 and ABZR88_RS06370 are separated by 10 nucleotides
ABZR88_RS06350: ABZR88_RS06350 - ATP-grasp domain-containing protein, at 1,575,874 to 1,576,923
_RS06350
ABZR88_RS06355: ABZR88_RS06355 - PqqD family protein, at 1,576,926 to 1,577,168
_RS06355
ABZR88_RS06360: ABZR88_RS06360 - response regulator, at 1,577,507 to 1,577,878
_RS06360
ABZR88_RS06365: ABZR88_RS06365 - LytTR family DNA-binding domain-containing protein, at 1,578,097 to 1,578,798
_RS06365
ABZR88_RS06370: ABZR88_RS06370 - sensor histidine kinase, at 1,578,809 to 1,579,987
_RS06370
Position (kb)
1577
1578 Strain fitness (log2 ratio)
-1
0
1
2 at 1576.578 kb on + strand, within ABZR88_RS06350 at 1576.626 kb on - strand, within ABZR88_RS06350 at 1576.939 kb on - strand at 1576.943 kb on + strand at 1577.246 kb on + strand at 1577.314 kb on + strand at 1577.322 kb on - strand at 1577.335 kb on - strand at 1577.338 kb on - strand at 1577.405 kb on + strand at 1577.408 kb on - strand at 1577.413 kb on - strand at 1577.502 kb on - strand at 1577.573 kb on + strand, within ABZR88_RS06360 at 1577.804 kb on - strand, within ABZR88_RS06360 at 1577.806 kb on + strand, within ABZR88_RS06360 at 1577.967 kb on + strand at 1578.061 kb on - strand at 1578.127 kb on - strand at 1578.127 kb on - strand at 1578.146 kb on - strand at 1578.146 kb on - strand at 1578.277 kb on + strand, within ABZR88_RS06365 at 1578.286 kb on + strand, within ABZR88_RS06365 at 1578.309 kb on + strand, within ABZR88_RS06365 at 1578.438 kb on - strand, within ABZR88_RS06365 at 1578.722 kb on + strand, within ABZR88_RS06365 at 1578.814 kb on + strand at 1578.814 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 1,576,578 + ABZR88_RS06350 0.67 -0.2 1,576,626 - ABZR88_RS06350 0.72 -0.8 1,576,939 - +1.9 1,576,943 + -0.4 1,577,246 + -0.4 1,577,314 + +0.2 1,577,322 - -0.2 1,577,335 - +0.4 1,577,338 - +1.3 1,577,405 + -0.0 1,577,408 - -0.3 1,577,413 - -0.4 1,577,502 - -0.9 1,577,573 + ABZR88_RS06360 0.18 -0.3 1,577,804 - ABZR88_RS06360 0.80 -1.0 1,577,806 + ABZR88_RS06360 0.80 -1.3 1,577,967 + +0.6 1,578,061 - -1.3 1,578,127 - -0.0 1,578,127 - -0.2 1,578,146 - +0.2 1,578,146 - -0.0 1,578,277 + ABZR88_RS06365 0.26 +0.1 1,578,286 + ABZR88_RS06365 0.27 +0.9 1,578,309 + ABZR88_RS06365 0.30 -0.7 1,578,438 - ABZR88_RS06365 0.49 +0.8 1,578,722 + ABZR88_RS06365 0.89 +0.2 1,578,814 + -1.4 1,578,814 + -0.2
Or see this region's nucleotide sequence