Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS06360

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS06350 and ABZR88_RS06355 are separated by 2 nucleotidesABZR88_RS06355 and ABZR88_RS06360 are separated by 338 nucleotidesABZR88_RS06360 and ABZR88_RS06365 are separated by 218 nucleotidesABZR88_RS06365 and ABZR88_RS06370 are separated by 10 nucleotides ABZR88_RS06350: ABZR88_RS06350 - ATP-grasp domain-containing protein, at 1,575,874 to 1,576,923 _RS06350 ABZR88_RS06355: ABZR88_RS06355 - PqqD family protein, at 1,576,926 to 1,577,168 _RS06355 ABZR88_RS06360: ABZR88_RS06360 - response regulator, at 1,577,507 to 1,577,878 _RS06360 ABZR88_RS06365: ABZR88_RS06365 - LytTR family DNA-binding domain-containing protein, at 1,578,097 to 1,578,798 _RS06365 ABZR88_RS06370: ABZR88_RS06370 - sensor histidine kinase, at 1,578,809 to 1,579,987 _RS06370 Position (kb) 1577 1578Strain fitness (log2 ratio) -1 0 1 2at 1576.578 kb on + strand, within ABZR88_RS06350at 1576.626 kb on - strand, within ABZR88_RS06350at 1576.939 kb on - strandat 1576.943 kb on + strandat 1577.246 kb on + strandat 1577.314 kb on + strandat 1577.322 kb on - strandat 1577.335 kb on - strandat 1577.338 kb on - strandat 1577.405 kb on + strandat 1577.408 kb on - strandat 1577.413 kb on - strandat 1577.502 kb on - strandat 1577.573 kb on + strand, within ABZR88_RS06360at 1577.804 kb on - strand, within ABZR88_RS06360at 1577.806 kb on + strand, within ABZR88_RS06360at 1577.967 kb on + strandat 1578.061 kb on - strandat 1578.127 kb on - strandat 1578.127 kb on - strandat 1578.146 kb on - strandat 1578.146 kb on - strandat 1578.277 kb on + strand, within ABZR88_RS06365at 1578.286 kb on + strand, within ABZR88_RS06365at 1578.309 kb on + strand, within ABZR88_RS06365at 1578.438 kb on - strand, within ABZR88_RS06365at 1578.722 kb on + strand, within ABZR88_RS06365at 1578.814 kb on + strandat 1578.814 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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1,576,578 + ABZR88_RS06350 0.67 -0.2
1,576,626 - ABZR88_RS06350 0.72 -0.8
1,576,939 - +1.9
1,576,943 + -0.4
1,577,246 + -0.4
1,577,314 + +0.2
1,577,322 - -0.2
1,577,335 - +0.4
1,577,338 - +1.3
1,577,405 + -0.0
1,577,408 - -0.3
1,577,413 - -0.4
1,577,502 - -0.9
1,577,573 + ABZR88_RS06360 0.18 -0.3
1,577,804 - ABZR88_RS06360 0.80 -1.0
1,577,806 + ABZR88_RS06360 0.80 -1.3
1,577,967 + +0.6
1,578,061 - -1.3
1,578,127 - -0.0
1,578,127 - -0.2
1,578,146 - +0.2
1,578,146 - -0.0
1,578,277 + ABZR88_RS06365 0.26 +0.1
1,578,286 + ABZR88_RS06365 0.27 +0.9
1,578,309 + ABZR88_RS06365 0.30 -0.7
1,578,438 - ABZR88_RS06365 0.49 +0.8
1,578,722 + ABZR88_RS06365 0.89 +0.2
1,578,814 + -1.4
1,578,814 + -0.2

Or see this region's nucleotide sequence