Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS06290 and ABZR88_RS06295 are separated by 20 nucleotides ABZR88_RS06295 and ABZR88_RS06300 are separated by 162 nucleotides
ABZR88_RS06290: ABZR88_RS06290 - glycoside hydrolase family 43 protein, at 1,562,524 to 1,563,510
_RS06290
ABZR88_RS06295: ABZR88_RS06295 - family 43 glycosylhydrolase, at 1,563,531 to 1,564,607
_RS06295
ABZR88_RS06300: ABZR88_RS06300 - polysaccharide deacetylase family protein, at 1,564,770 to 1,565,612
_RS06300
Position (kb)
1563
1564
1565 Strain fitness (log2 ratio)
-2
-1
0
1 at 1562.589 kb on - strand at 1562.810 kb on + strand, within ABZR88_RS06290 at 1562.811 kb on - strand, within ABZR88_RS06290 at 1562.820 kb on - strand, within ABZR88_RS06290 at 1562.869 kb on + strand, within ABZR88_RS06290 at 1563.023 kb on - strand, within ABZR88_RS06290 at 1563.042 kb on + strand, within ABZR88_RS06290 at 1563.046 kb on + strand, within ABZR88_RS06290 at 1563.047 kb on - strand, within ABZR88_RS06290 at 1563.098 kb on - strand, within ABZR88_RS06290 at 1563.104 kb on - strand, within ABZR88_RS06290 at 1563.139 kb on + strand, within ABZR88_RS06290 at 1563.358 kb on - strand, within ABZR88_RS06290 at 1563.359 kb on + strand, within ABZR88_RS06290 at 1563.360 kb on - strand, within ABZR88_RS06290 at 1563.537 kb on + strand at 1563.545 kb on + strand at 1563.658 kb on + strand, within ABZR88_RS06295 at 1563.732 kb on - strand, within ABZR88_RS06295 at 1563.818 kb on - strand, within ABZR88_RS06295 at 1564.182 kb on - strand, within ABZR88_RS06295 at 1564.274 kb on - strand, within ABZR88_RS06295 at 1564.276 kb on + strand, within ABZR88_RS06295 at 1564.494 kb on - strand, within ABZR88_RS06295 at 1564.502 kb on - strand at 1564.502 kb on - strand at 1564.617 kb on - strand at 1564.738 kb on - strand at 1564.746 kb on + strand at 1564.871 kb on - strand, within ABZR88_RS06300 at 1564.878 kb on + strand, within ABZR88_RS06300 at 1564.947 kb on - strand, within ABZR88_RS06300 at 1564.954 kb on - strand, within ABZR88_RS06300 at 1565.112 kb on + strand, within ABZR88_RS06300 at 1565.141 kb on + strand, within ABZR88_RS06300 at 1565.369 kb on + strand, within ABZR88_RS06300 at 1565.411 kb on + strand, within ABZR88_RS06300 at 1565.411 kb on + strand, within ABZR88_RS06300 at 1565.444 kb on + strand, within ABZR88_RS06300 at 1565.450 kb on - strand, within ABZR88_RS06300 at 1565.482 kb on - strand, within ABZR88_RS06300 at 1565.550 kb on + strand at 1565.588 kb on - strand at 1565.603 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 1,562,589 - -1.6 1,562,810 + ABZR88_RS06290 0.29 -0.6 1,562,811 - ABZR88_RS06290 0.29 +1.2 1,562,820 - ABZR88_RS06290 0.30 -0.1 1,562,869 + ABZR88_RS06290 0.35 -1.4 1,563,023 - ABZR88_RS06290 0.51 -0.6 1,563,042 + ABZR88_RS06290 0.52 -0.6 1,563,046 + ABZR88_RS06290 0.53 +1.2 1,563,047 - ABZR88_RS06290 0.53 +1.2 1,563,098 - ABZR88_RS06290 0.58 -0.4 1,563,104 - ABZR88_RS06290 0.59 +0.4 1,563,139 + ABZR88_RS06290 0.62 +1.2 1,563,358 - ABZR88_RS06290 0.84 -1.6 1,563,359 + ABZR88_RS06290 0.85 -0.2 1,563,360 - ABZR88_RS06290 0.85 +0.7 1,563,537 + +0.6 1,563,545 + -0.4 1,563,658 + ABZR88_RS06295 0.12 -0.3 1,563,732 - ABZR88_RS06295 0.19 +0.3 1,563,818 - ABZR88_RS06295 0.27 -0.1 1,564,182 - ABZR88_RS06295 0.60 +0.5 1,564,274 - ABZR88_RS06295 0.69 +0.4 1,564,276 + ABZR88_RS06295 0.69 +0.4 1,564,494 - ABZR88_RS06295 0.89 -0.0 1,564,502 - +0.4 1,564,502 - -0.7 1,564,617 - -0.2 1,564,738 - +1.4 1,564,746 + +0.1 1,564,871 - ABZR88_RS06300 0.12 +0.1 1,564,878 + ABZR88_RS06300 0.13 -0.5 1,564,947 - ABZR88_RS06300 0.21 +0.6 1,564,954 - ABZR88_RS06300 0.22 +0.2 1,565,112 + ABZR88_RS06300 0.41 +1.6 1,565,141 + ABZR88_RS06300 0.44 -1.8 1,565,369 + ABZR88_RS06300 0.71 -0.1 1,565,411 + ABZR88_RS06300 0.76 +0.0 1,565,411 + ABZR88_RS06300 0.76 -0.4 1,565,444 + ABZR88_RS06300 0.80 -0.8 1,565,450 - ABZR88_RS06300 0.81 +0.5 1,565,482 - ABZR88_RS06300 0.84 -0.6 1,565,550 + +0.1 1,565,588 - -0.1 1,565,603 + +1.2
Or see this region's nucleotide sequence