Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS05625 and ABZR88_RS05630 overlap by 23 nucleotides ABZR88_RS05630 and ABZR88_RS05635 are separated by 108 nucleotides ABZR88_RS05635 and ABZR88_RS05640 overlap by 10 nucleotides
ABZR88_RS05625: ABZR88_RS05625 - response regulator, at 1,366,337 to 1,367,386
_RS05625
ABZR88_RS05630: ABZR88_RS05630 - PAS domain-containing sensor histidine kinase, at 1,367,364 to 1,368,572
_RS05630
ABZR88_RS05635: ABZR88_RS05635 - DUF4249 family protein, at 1,368,681 to 1,369,472
_RS05635
ABZR88_RS05640: ABZR88_RS05640 - carboxypeptidase-like regulatory domain-containing protein, at 1,369,463 to 1,372,273
_RS05640
Position (kb) 1367
1368
1369 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1366.373 kb on + strand at 1366.387 kb on + strand at 1366.667 kb on + strand, within ABZR88_RS05625 at 1366.667 kb on + strand, within ABZR88_RS05625 at 1366.668 kb on - strand, within ABZR88_RS05625 at 1366.668 kb on - strand, within ABZR88_RS05625 at 1366.765 kb on - strand, within ABZR88_RS05625 at 1367.085 kb on + strand, within ABZR88_RS05625 at 1367.227 kb on + strand, within ABZR88_RS05625 at 1367.230 kb on + strand, within ABZR88_RS05625 at 1367.409 kb on - strand at 1367.409 kb on - strand at 1367.597 kb on + strand, within ABZR88_RS05630 at 1367.678 kb on + strand, within ABZR88_RS05630 at 1367.964 kb on + strand, within ABZR88_RS05630 at 1367.965 kb on - strand, within ABZR88_RS05630 at 1367.968 kb on + strand, within ABZR88_RS05630 at 1367.969 kb on - strand, within ABZR88_RS05630 at 1367.969 kb on - strand, within ABZR88_RS05630 at 1368.093 kb on + strand, within ABZR88_RS05630 at 1368.093 kb on + strand, within ABZR88_RS05630 at 1368.542 kb on + strand at 1368.552 kb on + strand at 1368.621 kb on + strand at 1368.860 kb on + strand, within ABZR88_RS05635 at 1368.876 kb on + strand, within ABZR88_RS05635 at 1369.089 kb on - strand, within ABZR88_RS05635 at 1369.094 kb on - strand, within ABZR88_RS05635 at 1369.258 kb on - strand, within ABZR88_RS05635 at 1369.368 kb on + strand, within ABZR88_RS05635 at 1369.443 kb on + strand at 1369.458 kb on + strand at 1369.461 kb on - strand at 1369.548 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 1,366,373 + +0.1 1,366,387 + +0.9 1,366,667 + ABZR88_RS05625 0.31 -0.2 1,366,667 + ABZR88_RS05625 0.31 +0.6 1,366,668 - ABZR88_RS05625 0.32 +0.3 1,366,668 - ABZR88_RS05625 0.32 +0.2 1,366,765 - ABZR88_RS05625 0.41 +0.6 1,367,085 + ABZR88_RS05625 0.71 +1.6 1,367,227 + ABZR88_RS05625 0.85 +0.2 1,367,230 + ABZR88_RS05625 0.85 +0.6 1,367,409 - -0.9 1,367,409 - -4.1 1,367,597 + ABZR88_RS05630 0.19 -1.5 1,367,678 + ABZR88_RS05630 0.26 -1.0 1,367,964 + ABZR88_RS05630 0.50 -1.5 1,367,965 - ABZR88_RS05630 0.50 -5.3 1,367,968 + ABZR88_RS05630 0.50 -0.5 1,367,969 - ABZR88_RS05630 0.50 -5.6 1,367,969 - ABZR88_RS05630 0.50 +1.2 1,368,093 + ABZR88_RS05630 0.60 -0.7 1,368,093 + ABZR88_RS05630 0.60 -0.4 1,368,542 + +0.1 1,368,552 + +0.9 1,368,621 + -0.4 1,368,860 + ABZR88_RS05635 0.23 +0.4 1,368,876 + ABZR88_RS05635 0.25 -0.1 1,369,089 - ABZR88_RS05635 0.52 +0.4 1,369,094 - ABZR88_RS05635 0.52 -0.1 1,369,258 - ABZR88_RS05635 0.73 +0.2 1,369,368 + ABZR88_RS05635 0.87 -0.8 1,369,443 + -0.0 1,369,458 + -0.1 1,369,461 - -0.2 1,369,548 + +1.2
Or see this region's nucleotide sequence