Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS05220

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS05215 and ABZR88_RS05220 are separated by 2 nucleotidesABZR88_RS05220 and ABZR88_RS05225 are separated by 71 nucleotides ABZR88_RS05215: ABZR88_RS05215 - 3-dehydroquinate synthase, at 1,238,212 to 1,239,291 _RS05215 ABZR88_RS05220: ABZR88_RS05220 - RNA-binding S4 domain-containing protein, at 1,239,294 to 1,239,500 _RS05220 ABZR88_RS05225: ABZR88_RS05225 - proline dehydrogenase family protein, at 1,239,572 to 1,240,783 _RS05225 Position (kb) 1239 1240Strain fitness (log2 ratio) -2 -1 0 1 2at 1239.295 kb on + strandat 1239.318 kb on - strand, within ABZR88_RS05220at 1239.321 kb on - strand, within ABZR88_RS05220at 1239.387 kb on - strand, within ABZR88_RS05220at 1239.533 kb on + strandat 1239.565 kb on + strandat 1239.565 kb on + strandat 1239.746 kb on - strand, within ABZR88_RS05225at 1239.753 kb on + strand, within ABZR88_RS05225at 1239.833 kb on - strand, within ABZR88_RS05225at 1239.876 kb on + strand, within ABZR88_RS05225at 1239.881 kb on + strand, within ABZR88_RS05225at 1239.882 kb on - strand, within ABZR88_RS05225at 1239.922 kb on + strand, within ABZR88_RS05225at 1240.137 kb on + strand, within ABZR88_RS05225at 1240.208 kb on + strand, within ABZR88_RS05225at 1240.261 kb on + strand, within ABZR88_RS05225at 1240.396 kb on - strand, within ABZR88_RS05225at 1240.466 kb on - strand, within ABZR88_RS05225

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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1,239,295 + -0.1
1,239,318 - ABZR88_RS05220 0.12 -0.3
1,239,321 - ABZR88_RS05220 0.13 -0.7
1,239,387 - ABZR88_RS05220 0.45 -2.2
1,239,533 + -0.4
1,239,565 + -0.9
1,239,565 + +2.2
1,239,746 - ABZR88_RS05225 0.14 -0.4
1,239,753 + ABZR88_RS05225 0.15 -0.2
1,239,833 - ABZR88_RS05225 0.22 +0.5
1,239,876 + ABZR88_RS05225 0.25 -0.8
1,239,881 + ABZR88_RS05225 0.25 -0.4
1,239,882 - ABZR88_RS05225 0.26 -0.1
1,239,922 + ABZR88_RS05225 0.29 -0.9
1,240,137 + ABZR88_RS05225 0.47 +1.1
1,240,208 + ABZR88_RS05225 0.52 -0.8
1,240,261 + ABZR88_RS05225 0.57 -0.5
1,240,396 - ABZR88_RS05225 0.68 -0.4
1,240,466 - ABZR88_RS05225 0.74 +1.0

Or see this region's nucleotide sequence