Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS04295 and ABZR88_RS04300 are separated by 142 nucleotides ABZR88_RS04300 and ABZR88_RS04305 are separated by 28 nucleotides
ABZR88_RS04295: ABZR88_RS04295 - acyltransferase, at 1,026,268 to 1,027,449
_RS04295
ABZR88_RS04300: ABZR88_RS04300 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB, at 1,027,592 to 1,028,911
_RS04300
ABZR88_RS04305: ABZR88_RS04305 - prolipoprotein diacylglyceryl transferase, at 1,028,940 to 1,030,118
_RS04305
Position (kb)
1027
1028
1029 Strain fitness (log2 ratio)
-2
-1
0
1 at 1026.620 kb on - strand, within ABZR88_RS04295 at 1026.624 kb on + strand, within ABZR88_RS04295 at 1026.625 kb on - strand, within ABZR88_RS04295 at 1026.628 kb on + strand, within ABZR88_RS04295 at 1026.628 kb on + strand, within ABZR88_RS04295 at 1026.699 kb on + strand, within ABZR88_RS04295 at 1026.700 kb on - strand, within ABZR88_RS04295 at 1026.704 kb on - strand, within ABZR88_RS04295 at 1026.721 kb on + strand, within ABZR88_RS04295 at 1026.722 kb on - strand, within ABZR88_RS04295 at 1026.725 kb on + strand, within ABZR88_RS04295 at 1026.815 kb on + strand, within ABZR88_RS04295 at 1026.837 kb on + strand, within ABZR88_RS04295 at 1026.837 kb on + strand, within ABZR88_RS04295 at 1026.896 kb on - strand, within ABZR88_RS04295 at 1027.103 kb on - strand, within ABZR88_RS04295 at 1027.117 kb on + strand, within ABZR88_RS04295 at 1027.142 kb on - strand, within ABZR88_RS04295 at 1027.233 kb on + strand, within ABZR88_RS04295 at 1027.324 kb on - strand, within ABZR88_RS04295 at 1027.324 kb on - strand, within ABZR88_RS04295 at 1027.331 kb on + strand at 1027.331 kb on + strand at 1027.345 kb on + strand at 1027.357 kb on - strand at 1027.357 kb on - strand at 1027.414 kb on - strand at 1027.451 kb on + strand at 1027.452 kb on - strand at 1027.452 kb on - strand at 1027.457 kb on + strand at 1027.466 kb on - strand at 1027.468 kb on - strand at 1027.524 kb on - strand at 1027.560 kb on - strand at 1027.597 kb on + strand at 1027.682 kb on + strand at 1027.922 kb on - strand, within ABZR88_RS04300 at 1027.979 kb on - strand, within ABZR88_RS04300 at 1028.051 kb on + strand, within ABZR88_RS04300 at 1028.155 kb on - strand, within ABZR88_RS04300 at 1028.239 kb on - strand, within ABZR88_RS04300 at 1028.461 kb on - strand, within ABZR88_RS04300 at 1028.577 kb on + strand, within ABZR88_RS04300 at 1028.898 kb on + strand at 1028.898 kb on + strand at 1028.899 kb on - strand at 1028.909 kb on + strand at 1028.909 kb on + strand at 1028.913 kb on + strand at 1028.939 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 1,026,620 - ABZR88_RS04295 0.30 -0.4 1,026,624 + ABZR88_RS04295 0.30 +0.5 1,026,625 - ABZR88_RS04295 0.30 +0.3 1,026,628 + ABZR88_RS04295 0.30 -0.6 1,026,628 + ABZR88_RS04295 0.30 +1.2 1,026,699 + ABZR88_RS04295 0.36 -1.1 1,026,700 - ABZR88_RS04295 0.37 +1.0 1,026,704 - ABZR88_RS04295 0.37 -0.0 1,026,721 + ABZR88_RS04295 0.38 +0.2 1,026,722 - ABZR88_RS04295 0.38 -1.1 1,026,725 + ABZR88_RS04295 0.39 -0.8 1,026,815 + ABZR88_RS04295 0.46 +0.2 1,026,837 + ABZR88_RS04295 0.48 +1.6 1,026,837 + ABZR88_RS04295 0.48 +0.0 1,026,896 - ABZR88_RS04295 0.53 -0.1 1,027,103 - ABZR88_RS04295 0.71 -1.4 1,027,117 + ABZR88_RS04295 0.72 -0.2 1,027,142 - ABZR88_RS04295 0.74 -1.1 1,027,233 + ABZR88_RS04295 0.82 +0.2 1,027,324 - ABZR88_RS04295 0.89 +0.5 1,027,324 - ABZR88_RS04295 0.89 +1.2 1,027,331 + +0.6 1,027,331 + -0.5 1,027,345 + -0.1 1,027,357 - -0.2 1,027,357 - +0.3 1,027,414 - +1.2 1,027,451 + -0.6 1,027,452 - -0.8 1,027,452 - +0.8 1,027,457 + +0.4 1,027,466 - -0.3 1,027,468 - +0.5 1,027,524 - +0.2 1,027,560 - +0.0 1,027,597 + -1.2 1,027,682 + -1.1 1,027,922 - ABZR88_RS04300 0.25 -2.2 1,027,979 - ABZR88_RS04300 0.29 +0.2 1,028,051 + ABZR88_RS04300 0.35 -0.8 1,028,155 - ABZR88_RS04300 0.43 -1.2 1,028,239 - ABZR88_RS04300 0.49 -1.0 1,028,461 - ABZR88_RS04300 0.66 +0.9 1,028,577 + ABZR88_RS04300 0.75 -1.8 1,028,898 + -0.8 1,028,898 + +0.4 1,028,899 - -0.8 1,028,909 + +0.0 1,028,909 + -0.4 1,028,913 + -0.2 1,028,939 - +0.3
Or see this region's nucleotide sequence