Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS04300

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS04295 and ABZR88_RS04300 are separated by 142 nucleotidesABZR88_RS04300 and ABZR88_RS04305 are separated by 28 nucleotides ABZR88_RS04295: ABZR88_RS04295 - acyltransferase, at 1,026,268 to 1,027,449 _RS04295 ABZR88_RS04300: ABZR88_RS04300 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB, at 1,027,592 to 1,028,911 _RS04300 ABZR88_RS04305: ABZR88_RS04305 - prolipoprotein diacylglyceryl transferase, at 1,028,940 to 1,030,118 _RS04305 Position (kb) 1027 1028 1029Strain fitness (log2 ratio) -2 -1 0 1at 1026.620 kb on - strand, within ABZR88_RS04295at 1026.624 kb on + strand, within ABZR88_RS04295at 1026.625 kb on - strand, within ABZR88_RS04295at 1026.628 kb on + strand, within ABZR88_RS04295at 1026.628 kb on + strand, within ABZR88_RS04295at 1026.699 kb on + strand, within ABZR88_RS04295at 1026.700 kb on - strand, within ABZR88_RS04295at 1026.704 kb on - strand, within ABZR88_RS04295at 1026.721 kb on + strand, within ABZR88_RS04295at 1026.722 kb on - strand, within ABZR88_RS04295at 1026.725 kb on + strand, within ABZR88_RS04295at 1026.815 kb on + strand, within ABZR88_RS04295at 1026.837 kb on + strand, within ABZR88_RS04295at 1026.837 kb on + strand, within ABZR88_RS04295at 1026.896 kb on - strand, within ABZR88_RS04295at 1027.103 kb on - strand, within ABZR88_RS04295at 1027.117 kb on + strand, within ABZR88_RS04295at 1027.142 kb on - strand, within ABZR88_RS04295at 1027.233 kb on + strand, within ABZR88_RS04295at 1027.324 kb on - strand, within ABZR88_RS04295at 1027.324 kb on - strand, within ABZR88_RS04295at 1027.331 kb on + strandat 1027.331 kb on + strandat 1027.345 kb on + strandat 1027.357 kb on - strandat 1027.357 kb on - strandat 1027.414 kb on - strandat 1027.451 kb on + strandat 1027.452 kb on - strandat 1027.452 kb on - strandat 1027.457 kb on + strandat 1027.466 kb on - strandat 1027.468 kb on - strandat 1027.524 kb on - strandat 1027.560 kb on - strandat 1027.597 kb on + strandat 1027.682 kb on + strandat 1027.922 kb on - strand, within ABZR88_RS04300at 1027.979 kb on - strand, within ABZR88_RS04300at 1028.051 kb on + strand, within ABZR88_RS04300at 1028.155 kb on - strand, within ABZR88_RS04300at 1028.239 kb on - strand, within ABZR88_RS04300at 1028.461 kb on - strand, within ABZR88_RS04300at 1028.577 kb on + strand, within ABZR88_RS04300at 1028.898 kb on + strandat 1028.898 kb on + strandat 1028.899 kb on - strandat 1028.909 kb on + strandat 1028.909 kb on + strandat 1028.913 kb on + strandat 1028.939 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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1,026,620 - ABZR88_RS04295 0.30 -0.4
1,026,624 + ABZR88_RS04295 0.30 +0.5
1,026,625 - ABZR88_RS04295 0.30 +0.3
1,026,628 + ABZR88_RS04295 0.30 -0.6
1,026,628 + ABZR88_RS04295 0.30 +1.2
1,026,699 + ABZR88_RS04295 0.36 -1.1
1,026,700 - ABZR88_RS04295 0.37 +1.0
1,026,704 - ABZR88_RS04295 0.37 -0.0
1,026,721 + ABZR88_RS04295 0.38 +0.2
1,026,722 - ABZR88_RS04295 0.38 -1.1
1,026,725 + ABZR88_RS04295 0.39 -0.8
1,026,815 + ABZR88_RS04295 0.46 +0.2
1,026,837 + ABZR88_RS04295 0.48 +1.6
1,026,837 + ABZR88_RS04295 0.48 +0.0
1,026,896 - ABZR88_RS04295 0.53 -0.1
1,027,103 - ABZR88_RS04295 0.71 -1.4
1,027,117 + ABZR88_RS04295 0.72 -0.2
1,027,142 - ABZR88_RS04295 0.74 -1.1
1,027,233 + ABZR88_RS04295 0.82 +0.2
1,027,324 - ABZR88_RS04295 0.89 +0.5
1,027,324 - ABZR88_RS04295 0.89 +1.2
1,027,331 + +0.6
1,027,331 + -0.5
1,027,345 + -0.1
1,027,357 - -0.2
1,027,357 - +0.3
1,027,414 - +1.2
1,027,451 + -0.6
1,027,452 - -0.8
1,027,452 - +0.8
1,027,457 + +0.4
1,027,466 - -0.3
1,027,468 - +0.5
1,027,524 - +0.2
1,027,560 - +0.0
1,027,597 + -1.2
1,027,682 + -1.1
1,027,922 - ABZR88_RS04300 0.25 -2.2
1,027,979 - ABZR88_RS04300 0.29 +0.2
1,028,051 + ABZR88_RS04300 0.35 -0.8
1,028,155 - ABZR88_RS04300 0.43 -1.2
1,028,239 - ABZR88_RS04300 0.49 -1.0
1,028,461 - ABZR88_RS04300 0.66 +0.9
1,028,577 + ABZR88_RS04300 0.75 -1.8
1,028,898 + -0.8
1,028,898 + +0.4
1,028,899 - -0.8
1,028,909 + +0.0
1,028,909 + -0.4
1,028,913 + -0.2
1,028,939 - +0.3

Or see this region's nucleotide sequence