Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS04255

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS04245 and ABZR88_RS04250 are separated by 108 nucleotidesABZR88_RS04250 and ABZR88_RS04255 are separated by 141 nucleotidesABZR88_RS04255 and ABZR88_RS04260 are separated by 4 nucleotides ABZR88_RS04245: ABZR88_RS04245 - 4-hydroxyphenylpyruvate dioxygenase, at 1,014,990 to 1,016,129 _RS04245 ABZR88_RS04250: ABZR88_RS04250 - DNA alkylation repair protein, at 1,016,238 to 1,016,897 _RS04250 ABZR88_RS04255: ABZR88_RS04255 - YciI family protein, at 1,017,039 to 1,017,500 _RS04255 ABZR88_RS04260: ABZR88_RS04260 - YdeI family protein, at 1,017,505 to 1,018,116 _RS04260 Position (kb) 1017 1018Strain fitness (log2 ratio) -2 -1 0 1at 1016.154 kb on - strandat 1016.255 kb on + strandat 1016.390 kb on + strand, within ABZR88_RS04250at 1016.390 kb on + strand, within ABZR88_RS04250at 1016.587 kb on - strand, within ABZR88_RS04250at 1016.701 kb on + strand, within ABZR88_RS04250at 1016.802 kb on - strand, within ABZR88_RS04250at 1016.835 kb on - strandat 1016.888 kb on - strandat 1017.006 kb on + strandat 1017.017 kb on + strandat 1017.018 kb on - strandat 1017.261 kb on - strand, within ABZR88_RS04255at 1017.406 kb on + strand, within ABZR88_RS04255at 1017.535 kb on + strandat 1017.536 kb on - strandat 1017.536 kb on - strandat 1017.654 kb on + strand, within ABZR88_RS04260at 1017.824 kb on + strand, within ABZR88_RS04260at 1017.835 kb on + strand, within ABZR88_RS04260at 1017.836 kb on - strand, within ABZR88_RS04260at 1018.006 kb on + strand, within ABZR88_RS04260at 1018.010 kb on + strand, within ABZR88_RS04260at 1018.205 kb on - strandat 1018.213 kb on - strandat 1018.232 kb on - strandat 1018.287 kb on - strandat 1018.343 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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1,016,154 - +1.2
1,016,255 + -0.7
1,016,390 + ABZR88_RS04250 0.23 -0.3
1,016,390 + ABZR88_RS04250 0.23 -0.4
1,016,587 - ABZR88_RS04250 0.53 -0.7
1,016,701 + ABZR88_RS04250 0.70 -0.1
1,016,802 - ABZR88_RS04250 0.85 -0.4
1,016,835 - -0.6
1,016,888 - +0.2
1,017,006 + +0.4
1,017,017 + -0.1
1,017,018 - -0.5
1,017,261 - ABZR88_RS04255 0.48 -2.2
1,017,406 + ABZR88_RS04255 0.79 -1.5
1,017,535 + +0.3
1,017,536 - -0.1
1,017,536 - -0.1
1,017,654 + ABZR88_RS04260 0.24 -0.7
1,017,824 + ABZR88_RS04260 0.52 -0.1
1,017,835 + ABZR88_RS04260 0.54 +0.1
1,017,836 - ABZR88_RS04260 0.54 -0.0
1,018,006 + ABZR88_RS04260 0.82 +0.2
1,018,010 + ABZR88_RS04260 0.83 +1.2
1,018,205 - -0.1
1,018,213 - -0.5
1,018,232 - -0.0
1,018,287 - +0.1
1,018,343 - -0.4

Or see this region's nucleotide sequence