Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS04210

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS04200 and ABZR88_RS04205 are separated by 68 nucleotidesABZR88_RS04205 and ABZR88_RS04210 are separated by 198 nucleotidesABZR88_RS04210 and ABZR88_RS04215 are separated by 60 nucleotides ABZR88_RS04200: ABZR88_RS04200 - DUF4349 domain-containing protein, at 1,003,156 to 1,004,034 _RS04200 ABZR88_RS04205: ABZR88_RS04205 - hypothetical protein, at 1,004,103 to 1,004,300 _RS04205 ABZR88_RS04210: ABZR88_RS04210 - gliding motility lipoprotein GldB, at 1,004,499 to 1,005,551 _RS04210 ABZR88_RS04215: ABZR88_RS04215 - NAD+ synthase, at 1,005,612 to 1,007,261 _RS04215 Position (kb) 1004 1005 1006Strain fitness (log2 ratio) -2 -1 0 1at 1003.570 kb on + strand, within ABZR88_RS04200at 1003.683 kb on - strand, within ABZR88_RS04200at 1003.731 kb on - strand, within ABZR88_RS04200at 1003.775 kb on - strand, within ABZR88_RS04200at 1003.775 kb on - strand, within ABZR88_RS04200at 1003.794 kb on + strand, within ABZR88_RS04200at 1003.962 kb on + strandat 1004.124 kb on - strand, within ABZR88_RS04205at 1004.143 kb on + strand, within ABZR88_RS04205at 1004.143 kb on + strand, within ABZR88_RS04205at 1004.219 kb on + strand, within ABZR88_RS04205at 1004.225 kb on + strand, within ABZR88_RS04205at 1004.225 kb on + strand, within ABZR88_RS04205at 1004.317 kb on + strandat 1004.318 kb on - strandat 1004.393 kb on - strandat 1004.489 kb on + strandat 1004.489 kb on + strandat 1004.602 kb on + strandat 1004.753 kb on - strand, within ABZR88_RS04210at 1004.858 kb on - strand, within ABZR88_RS04210at 1004.975 kb on + strand, within ABZR88_RS04210at 1004.993 kb on - strand, within ABZR88_RS04210at 1005.075 kb on - strand, within ABZR88_RS04210at 1005.299 kb on + strand, within ABZR88_RS04210at 1005.396 kb on - strand, within ABZR88_RS04210at 1005.607 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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1,003,570 + ABZR88_RS04200 0.47 -2.5
1,003,683 - ABZR88_RS04200 0.60 -1.4
1,003,731 - ABZR88_RS04200 0.65 +0.1
1,003,775 - ABZR88_RS04200 0.70 +0.3
1,003,775 - ABZR88_RS04200 0.70 +0.1
1,003,794 + ABZR88_RS04200 0.73 +0.5
1,003,962 + -0.2
1,004,124 - ABZR88_RS04205 0.11 -0.3
1,004,143 + ABZR88_RS04205 0.20 -0.1
1,004,143 + ABZR88_RS04205 0.20 -0.2
1,004,219 + ABZR88_RS04205 0.59 -0.4
1,004,225 + ABZR88_RS04205 0.62 +0.7
1,004,225 + ABZR88_RS04205 0.62 +0.2
1,004,317 + +1.3
1,004,318 - -0.8
1,004,393 - +0.8
1,004,489 + -0.0
1,004,489 + -0.2
1,004,602 + -2.4
1,004,753 - ABZR88_RS04210 0.24 -1.4
1,004,858 - ABZR88_RS04210 0.34 -1.3
1,004,975 + ABZR88_RS04210 0.45 -0.8
1,004,993 - ABZR88_RS04210 0.47 -2.4
1,005,075 - ABZR88_RS04210 0.55 -1.5
1,005,299 + ABZR88_RS04210 0.76 -1.4
1,005,396 - ABZR88_RS04210 0.85 -1.7
1,005,607 - +0.2

Or see this region's nucleotide sequence