Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS04140 and ABZR88_RS04145 are separated by 6 nucleotides ABZR88_RS04145 and ABZR88_RS04150 are separated by 334 nucleotides
ABZR88_RS04140: ABZR88_RS04140 - gliding motility protein GldM, at 987,025 to 988,533
_RS04140
ABZR88_RS04145: ABZR88_RS04145 - gliding motility protein GldN, at 988,540 to 989,523
_RS04145
ABZR88_RS04150: ABZR88_RS04150 - excinuclease ABC subunit UvrC, at 989,858 to 991,660
_RS04150
Position (kb) 988
989
990 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 987.579 kb on + strand, within ABZR88_RS04140 at 987.580 kb on - strand, within ABZR88_RS04140 at 987.725 kb on - strand, within ABZR88_RS04140 at 987.746 kb on - strand, within ABZR88_RS04140 at 987.799 kb on - strand, within ABZR88_RS04140 at 987.835 kb on - strand, within ABZR88_RS04140 at 987.840 kb on + strand, within ABZR88_RS04140 at 987.856 kb on - strand, within ABZR88_RS04140 at 987.977 kb on + strand, within ABZR88_RS04140 at 988.051 kb on - strand, within ABZR88_RS04140 at 988.116 kb on + strand, within ABZR88_RS04140 at 988.328 kb on + strand, within ABZR88_RS04140 at 988.329 kb on - strand, within ABZR88_RS04140 at 988.371 kb on + strand, within ABZR88_RS04140 at 988.377 kb on + strand, within ABZR88_RS04140 at 988.434 kb on - strand at 988.446 kb on + strand at 988.531 kb on + strand at 988.786 kb on - strand, within ABZR88_RS04145 at 988.786 kb on - strand, within ABZR88_RS04145 at 988.838 kb on + strand, within ABZR88_RS04145 at 988.933 kb on - strand, within ABZR88_RS04145 at 989.064 kb on - strand, within ABZR88_RS04145 at 989.064 kb on - strand, within ABZR88_RS04145 at 989.093 kb on + strand, within ABZR88_RS04145 at 989.205 kb on + strand, within ABZR88_RS04145 at 989.461 kb on + strand at 989.462 kb on - strand at 989.543 kb on + strand at 989.643 kb on - strand at 989.676 kb on + strand at 989.677 kb on - strand at 989.688 kb on + strand at 990.041 kb on - strand, within ABZR88_RS04150 at 990.105 kb on - strand, within ABZR88_RS04150 at 990.191 kb on + strand, within ABZR88_RS04150 at 990.310 kb on + strand, within ABZR88_RS04150 at 990.377 kb on + strand, within ABZR88_RS04150 at 990.428 kb on + strand, within ABZR88_RS04150 at 990.429 kb on - strand, within ABZR88_RS04150 at 990.429 kb on - strand, within ABZR88_RS04150
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 987,579 + ABZR88_RS04140 0.37 -1.4 987,580 - ABZR88_RS04140 0.37 -1.9 987,725 - ABZR88_RS04140 0.46 -1.9 987,746 - ABZR88_RS04140 0.48 -1.9 987,799 - ABZR88_RS04140 0.51 -0.8 987,835 - ABZR88_RS04140 0.54 -0.9 987,840 + ABZR88_RS04140 0.54 -2.6 987,856 - ABZR88_RS04140 0.55 -1.0 987,977 + ABZR88_RS04140 0.63 -2.9 988,051 - ABZR88_RS04140 0.68 -1.4 988,116 + ABZR88_RS04140 0.72 -0.7 988,328 + ABZR88_RS04140 0.86 -1.7 988,329 - ABZR88_RS04140 0.86 -1.2 988,371 + ABZR88_RS04140 0.89 -0.0 988,377 + ABZR88_RS04140 0.90 -2.8 988,434 - -2.8 988,446 + -1.4 988,531 + -0.2 988,786 - ABZR88_RS04145 0.25 -1.6 988,786 - ABZR88_RS04145 0.25 -0.8 988,838 + ABZR88_RS04145 0.30 -1.8 988,933 - ABZR88_RS04145 0.40 -1.2 989,064 - ABZR88_RS04145 0.53 -1.8 989,064 - ABZR88_RS04145 0.53 -1.7 989,093 + ABZR88_RS04145 0.56 -2.0 989,205 + ABZR88_RS04145 0.68 -3.0 989,461 + -1.1 989,462 - -1.4 989,543 + +0.0 989,643 - -0.3 989,676 + -0.9 989,677 - +2.4 989,688 + +0.2 990,041 - ABZR88_RS04150 0.10 -0.4 990,105 - ABZR88_RS04150 0.14 +1.0 990,191 + ABZR88_RS04150 0.18 -0.4 990,310 + ABZR88_RS04150 0.25 -0.0 990,377 + ABZR88_RS04150 0.29 -0.2 990,428 + ABZR88_RS04150 0.32 -0.0 990,429 - ABZR88_RS04150 0.32 +0.4 990,429 - ABZR88_RS04150 0.32 -0.3
Or see this region's nucleotide sequence