Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS03810 and ABZR88_RS03815 are separated by 68 nucleotides ABZR88_RS03815 and ABZR88_RS03820 are separated by 262 nucleotides
ABZR88_RS03810: ABZR88_RS03810 - valine--tRNA ligase, at 903,825 to 906,473
_RS03810
ABZR88_RS03815: ABZR88_RS03815 - ATP-binding protein, at 906,542 to 908,347
_RS03815
ABZR88_RS03820: ABZR88_RS03820 - DUF4142 domain-containing protein, at 908,610 to 909,227
_RS03820
Position (kb) 906
907
908
909 Strain fitness (log2 ratio) -1
0
1 at 906.548 kb on - strand at 906.790 kb on + strand, within ABZR88_RS03815 at 906.810 kb on + strand, within ABZR88_RS03815 at 906.844 kb on - strand, within ABZR88_RS03815 at 906.869 kb on - strand, within ABZR88_RS03815 at 906.914 kb on + strand, within ABZR88_RS03815 at 906.963 kb on + strand, within ABZR88_RS03815 at 907.045 kb on + strand, within ABZR88_RS03815 at 907.049 kb on - strand, within ABZR88_RS03815 at 907.049 kb on - strand, within ABZR88_RS03815 at 907.372 kb on - strand, within ABZR88_RS03815 at 907.412 kb on - strand, within ABZR88_RS03815 at 907.438 kb on + strand, within ABZR88_RS03815 at 907.778 kb on + strand, within ABZR88_RS03815 at 908.118 kb on + strand, within ABZR88_RS03815 at 908.191 kb on + strand at 908.203 kb on + strand at 908.205 kb on + strand at 908.279 kb on + strand at 908.343 kb on + strand at 908.351 kb on + strand at 908.353 kb on - strand at 908.544 kb on + strand at 908.545 kb on - strand at 908.646 kb on - strand at 908.940 kb on - strand, within ABZR88_RS03820 at 908.992 kb on + strand, within ABZR88_RS03820 at 908.992 kb on + strand, within ABZR88_RS03820
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 906,548 - -0.2 906,790 + ABZR88_RS03815 0.14 -0.3 906,810 + ABZR88_RS03815 0.15 -0.4 906,844 - ABZR88_RS03815 0.17 -0.2 906,869 - ABZR88_RS03815 0.18 -0.3 906,914 + ABZR88_RS03815 0.21 -1.1 906,963 + ABZR88_RS03815 0.23 +0.0 907,045 + ABZR88_RS03815 0.28 -0.3 907,049 - ABZR88_RS03815 0.28 -0.6 907,049 - ABZR88_RS03815 0.28 -0.8 907,372 - ABZR88_RS03815 0.46 +0.7 907,412 - ABZR88_RS03815 0.48 +0.6 907,438 + ABZR88_RS03815 0.50 +0.1 907,778 + ABZR88_RS03815 0.68 +0.2 908,118 + ABZR88_RS03815 0.87 -0.0 908,191 + -0.4 908,203 + -1.6 908,205 + -0.2 908,279 + +0.7 908,343 + -0.4 908,351 + +0.2 908,353 - +0.2 908,544 + +0.8 908,545 - -0.0 908,646 - +0.8 908,940 - ABZR88_RS03820 0.53 +0.2 908,992 + ABZR88_RS03820 0.62 -0.4 908,992 + ABZR88_RS03820 0.62 +0.1
Or see this region's nucleotide sequence