Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS03555 and ABZR88_RS03560 are separated by 125 nucleotides ABZR88_RS03560 and ABZR88_RS03565 are separated by 72 nucleotides ABZR88_RS03565 and ABZR88_RS03570 are separated by 43 nucleotides
ABZR88_RS03555: ABZR88_RS03555 - 5'/3'-nucleotidase SurE, at 849,324 to 850,109
_RS03555
ABZR88_RS03560: ABZR88_RS03560 - hypothetical protein, at 850,235 to 850,780
_RS03560
ABZR88_RS03565: ABZR88_RS03565 - O-methyltransferase, at 850,853 to 851,638
_RS03565
ABZR88_RS03570: ABZR88_RS03570 - transglutaminase-like domain-containing protein, at 851,682 to 852,542
_RS03570
Position (kb) 850
851
852 Strain fitness (log2 ratio) -2
-1
0
1 at 849.858 kb on - strand, within ABZR88_RS03555 at 850.222 kb on + strand at 850.315 kb on + strand, within ABZR88_RS03560 at 850.356 kb on + strand, within ABZR88_RS03560 at 850.706 kb on - strand, within ABZR88_RS03560 at 850.757 kb on + strand at 850.764 kb on - strand at 850.780 kb on + strand at 850.810 kb on + strand at 850.901 kb on + strand at 851.423 kb on - strand, within ABZR88_RS03565 at 851.616 kb on - strand at 851.666 kb on + strand at 851.722 kb on + strand at 851.789 kb on - strand, within ABZR88_RS03570 at 851.945 kb on + strand, within ABZR88_RS03570 at 851.946 kb on - strand, within ABZR88_RS03570 at 852.092 kb on + strand, within ABZR88_RS03570 at 852.113 kb on + strand, within ABZR88_RS03570 at 852.141 kb on - strand, within ABZR88_RS03570 at 852.141 kb on - strand, within ABZR88_RS03570 at 852.233 kb on + strand, within ABZR88_RS03570 at 852.347 kb on + strand, within ABZR88_RS03570 at 852.367 kb on + strand, within ABZR88_RS03570 at 852.372 kb on - strand, within ABZR88_RS03570 at 852.475 kb on - strand at 852.475 kb on - strand at 852.545 kb on + strand at 852.566 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 849,858 - ABZR88_RS03555 0.68 -1.1 850,222 + -0.2 850,315 + ABZR88_RS03560 0.15 +1.7 850,356 + ABZR88_RS03560 0.22 +0.5 850,706 - ABZR88_RS03560 0.86 +0.1 850,757 + +0.7 850,764 - -0.2 850,780 + +0.8 850,810 + +1.0 850,901 + -0.3 851,423 - ABZR88_RS03565 0.73 -1.7 851,616 - -0.4 851,666 + +1.0 851,722 + +1.5 851,789 - ABZR88_RS03570 0.12 +0.7 851,945 + ABZR88_RS03570 0.31 +0.1 851,946 - ABZR88_RS03570 0.31 -0.2 852,092 + ABZR88_RS03570 0.48 -1.1 852,113 + ABZR88_RS03570 0.50 -1.8 852,141 - ABZR88_RS03570 0.53 -0.8 852,141 - ABZR88_RS03570 0.53 -1.1 852,233 + ABZR88_RS03570 0.64 +0.3 852,347 + ABZR88_RS03570 0.77 -1.5 852,367 + ABZR88_RS03570 0.80 -0.0 852,372 - ABZR88_RS03570 0.80 +1.2 852,475 - +0.3 852,475 - +1.2 852,545 + +0.0 852,566 + +0.2
Or see this region's nucleotide sequence