Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS02600 and ABZR88_RS02605 are separated by 21 nucleotides ABZR88_RS02605 and ABZR88_RS02610 are separated by 418 nucleotides
ABZR88_RS02600: ABZR88_RS02600 - T6SS effector amidase Tae4 family protein, at 601,200 to 605,363
_RS02600
ABZR88_RS02605: ABZR88_RS02605 - hypothetical protein, at 605,385 to 605,801
_RS02605
ABZR88_RS02610: ABZR88_RS02610 - site-specific integrase, at 606,220 to 607,332
_RS02610
Position (kb) 605
606 Strain fitness (log2 ratio) -2
-1
0
1
2 at 604.597 kb on - strand, within ABZR88_RS02600 at 604.623 kb on - strand, within ABZR88_RS02600 at 604.740 kb on + strand, within ABZR88_RS02600 at 604.744 kb on + strand, within ABZR88_RS02600 at 604.910 kb on - strand, within ABZR88_RS02600 at 605.013 kb on - strand at 605.067 kb on + strand at 605.072 kb on - strand at 605.104 kb on + strand at 605.172 kb on - strand at 605.215 kb on + strand at 605.215 kb on + strand at 605.216 kb on - strand at 605.223 kb on - strand at 605.284 kb on + strand at 605.287 kb on - strand at 605.295 kb on + strand at 605.341 kb on + strand at 605.347 kb on + strand at 605.348 kb on - strand at 605.508 kb on + strand, within ABZR88_RS02605 at 605.508 kb on + strand, within ABZR88_RS02605 at 605.539 kb on - strand, within ABZR88_RS02605 at 605.802 kb on + strand at 605.821 kb on + strand at 605.929 kb on + strand at 605.946 kb on + strand at 606.016 kb on - strand at 606.048 kb on + strand at 606.058 kb on + strand at 606.059 kb on - strand at 606.130 kb on - strand at 606.212 kb on - strand at 606.281 kb on + strand at 606.285 kb on + strand at 606.379 kb on - strand, within ABZR88_RS02610 at 606.533 kb on - strand, within ABZR88_RS02610 at 606.622 kb on + strand, within ABZR88_RS02610 at 606.772 kb on - strand, within ABZR88_RS02610
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 604,597 - ABZR88_RS02600 0.82 +0.2 604,623 - ABZR88_RS02600 0.82 -0.3 604,740 + ABZR88_RS02600 0.85 +1.0 604,744 + ABZR88_RS02600 0.85 -0.2 604,910 - ABZR88_RS02600 0.89 -0.2 605,013 - -0.4 605,067 + -0.8 605,072 - +0.0 605,104 + -0.8 605,172 - +0.3 605,215 + +2.0 605,215 + -0.2 605,216 - +0.1 605,223 - +0.7 605,284 + +1.3 605,287 - -0.3 605,295 + -1.0 605,341 + -1.0 605,347 + -0.5 605,348 - -0.5 605,508 + ABZR88_RS02605 0.29 -1.5 605,508 + ABZR88_RS02605 0.29 -2.5 605,539 - ABZR88_RS02605 0.37 -0.5 605,802 + -0.3 605,821 + -0.6 605,929 + +0.2 605,946 + -0.1 606,016 - +1.3 606,048 + +0.3 606,058 + -1.3 606,059 - -0.5 606,130 - +0.1 606,212 - +0.2 606,281 + +0.1 606,285 + +1.0 606,379 - ABZR88_RS02610 0.14 +0.0 606,533 - ABZR88_RS02610 0.28 +0.1 606,622 + ABZR88_RS02610 0.36 -0.4 606,772 - ABZR88_RS02610 0.50 -0.6
Or see this region's nucleotide sequence