Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS02355

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS02350 and ABZR88_RS02355 are separated by 392 nucleotidesABZR88_RS02355 and ABZR88_RS02360 are separated by 107 nucleotides ABZR88_RS02350: ABZR88_RS02350 - hypothetical protein, at 538,930 to 539,907 _RS02350 ABZR88_RS02355: ABZR88_RS02355 - hypothetical protein, at 540,300 to 540,458 _RS02355 ABZR88_RS02360: ABZR88_RS02360 - tetratricopeptide repeat-containing sensor histidine kinase, at 540,566 to 542,242 _RS02360 Position (kb) 540 541Strain fitness (log2 ratio) -1 0 1at 539.361 kb on + strand, within ABZR88_RS02350at 539.798 kb on - strand, within ABZR88_RS02350at 539.821 kb on - strandat 539.926 kb on + strandat 539.932 kb on + strandat 540.009 kb on - strandat 540.028 kb on + strandat 540.357 kb on - strand, within ABZR88_RS02355at 540.542 kb on + strandat 540.668 kb on + strandat 540.816 kb on - strand, within ABZR88_RS02360at 540.880 kb on + strand, within ABZR88_RS02360at 540.925 kb on + strand, within ABZR88_RS02360at 540.959 kb on + strand, within ABZR88_RS02360at 541.169 kb on - strand, within ABZR88_RS02360

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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539,361 + ABZR88_RS02350 0.44 +1.0
539,798 - ABZR88_RS02350 0.89 -1.5
539,821 - -0.5
539,926 + -0.2
539,932 + +0.4
540,009 - -0.3
540,028 + -1.3
540,357 - ABZR88_RS02355 0.36 -1.1
540,542 + -1.4
540,668 + -0.0
540,816 - ABZR88_RS02360 0.15 -0.6
540,880 + ABZR88_RS02360 0.19 -0.8
540,925 + ABZR88_RS02360 0.21 +0.6
540,959 + ABZR88_RS02360 0.23 +0.0
541,169 - ABZR88_RS02360 0.36 +0.5

Or see this region's nucleotide sequence